Basic Information

Insect: Parelbella ahira
Gene Symbol: -
Assembly: GCA_018244795.1
Location: DWME01010078.1:1-3958[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0011 0.077 14.1 0.0 2 23 198 220 197 220 0.95

2 11 0.035 2.5 9.3 7.4 1 19 280 298 280 303 0.91

3 11 0.39 28 6.1 0.9 5 23 312 330 310 330 0.94

4 11 0.0014 0.1 13.7 0.3 3 23 338 358 336 358 0.96

5 11 0.00011 0.0075 17.3 4.3 1 23 366 388 366 388 0.97

6 11 0.00024 0.017 16.2 1.0 1 23 397 420 397 420 0.97

7 11 0.00026 0.018 16.1 0.2 1 23 426 448 426 448 0.97

8 11 5.3e-06 0.00038 21.4 1.6 1 23 454 476 454 476 0.98

9 11 0.00055 0.039 15.0 1.1 1 23 481 503 481 503 0.98

10 11 7e-06 0.0005 21.0 6.5 1 23 509 531 509 531 0.97

11 11 0.00093 0.066 14.3 2.1 2 23 538 560 537 560 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0011	0.077	14.1	0.0	2	23	198	220	197	220	0.95
2	11	0.035	2.5	9.3	7.4	1	19	280	298	280	303	0.91
3	11	0.39	28	6.1	0.9	5	23	312	330	310	330	0.94
4	11	0.0014	0.1	13.7	0.3	3	23	338	358	336	358	0.96
5	11	0.00011	0.0075	17.3	4.3	1	23	366	388	366	388	0.97
6	11	0.00024	0.017	16.2	1.0	1	23	397	420	397	420	0.97
7	11	0.00026	0.018	16.1	0.2	1	23	426	448	426	448	0.97
8	11	5.3e-06	0.00038	21.4	1.6	1	23	454	476	454	476	0.98
9	11	0.00055	0.039	15.0	1.1	1	23	481	503	481	503	0.98
10	11	7e-06	0.0005	21.0	6.5	1	23	509	531	509	531	0.97
11	11	0.00093	0.066	14.3	2.1	2	23	538	560	537	560	0.95

Sequence Information

Coding Sequence: atgacaatgaTATTAAAAGACTTATGTAGACTATGTGCGACGAAAGACGACTTTTTAAAAGATTTGCTCGATGAAAGTAACGAAAATGTCTTAAAAATGATACAAGAATTCATACAAATCactGTACAAGAAAATGAGAATATGCCCACCAAGATTTGCATTAATTGTGAggataaaatgttatcatttcACATGTTCGTTTTGGAATGCTATAAAGTGCAAGAATCTCTTAGGAAAATGTATGTGGAGAATACTGACCATTTCCCAATTAAACTCGAGGAGGCCATTGATGATTTTGAAGATCCATCCATAAAGTCAGAGGTTAAAGATGAACTATCTGCAGAGGACATTGTGTGTGCAATAAACAATGAAGCTACATTATCAGAATTCAACAGAGATGATTTCGAAAATGATGACCACACatatgatgatgaggatgacgatgatgaatatgGTGATGTCTCTCTTGCACAACTGAAAGAGGCAAAAATGAAACATGTCAAAAGGAAAGTATTAACTGAGGAAGAAACGGAAAAATTAAAGAAGGTTCTAAAAGAAACTGACTTTAAGGTGAAGGATTTTGTAAAattGAAGTGCAATATTTGCGAGGAAGGAGTGAAGTCCTGGAGTGGGCTGCGAGTGCACTATGCCAAAGTACACAAAACGAAACCAGtagtatattgtatttgtgGTTTCCTCATCAGATCTAAGAGTGTTCTTTATAAGCATGTATCAGACCATAAAGTGGAAAGTAGAAAATttagaaaagaagaaaattcCGAGAGTAAGCAGCAGGAATCAAAATACTCCAGCCTTCATGTTAAAGATTTTGTAAATTTTACATGTACAGTCTGCCATAAACAGTGTTCAAGTTGGTACACCTTAAGGACACATTGTGAAAAAGCTCATAAAATTCGGCCAATAGTGCACTGCATTTGTGGCATCACCTTAAAATCCAAATCTGTCTTATACAAGCATGTTCAAGATCATAAAAATCCTGATATTCTCGCGTGTGACAAATGCCCAAGAATAACTAAAACATTAGCTGCcttaaacaaacacaaaatgAGACATATACCAAAAGCCGAGAGAAAGTTCTGCTGCTCATCATGTGAcaagatatttaatactaaagATACTTTGAAATCTCATGAAAGGTCTCACATACCTATAGAGgagagaaaaatatatcattgtgGTATTTGTGACTTAAAGTTCACGACGCGCTCGTCGGCGGCGTCGCACCGGCGCGTGGTGCACGACAAGATCAAGAGCTACGTGTGCGACCTGTGCGGCTATGCGTGCGGGACCAACGGCGAGCTGCGGCAGCACCGTGCCATCCACAGCGACGACAAGCCCTTCGTGTGCCGCACCTGCGCCAAGCCATTCAAAACGTACTCGAATCTCAAGACGCACATGGACACGCACGAGGACACGTCGTACACGTGCTACGTGTGCAGCCGCGTGCTCAACAGCCGTCGCACGCTGCGCAAGCACCTTCTGGTACACGAGGACAAGTGTCGTCACGTGTGCCACTACTGCAACAAGGCCTTCAAGAGAAGACAGACCTTGAAGGTGCACATGTACACGCACACGGGCGACAAGCCGCTGACGTGCAAGTGGTGCGAGGAGCGGTTCGCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACGCCGACAAGCTGGCGCCGCCGCACTACGGCTACGCGCACGACGCGCACCTCGCCGCGCTCCCCGCGCACCCCGCACACCCCGCACAC
Protein Sequence: MTMILKDLCRLCATKDDFLKDLLDESNENVLKMIQEFIQITVQENENMPTKICINCEDKMLSFHMFVLECYKVQESLRKMYVENTDHFPIKLEEAIDDFEDPSIKSEVKDELSAEDIVCAINNEATLSEFNRDDFENDDHTYDDEDDDDEYGDVSLAQLKEAKMKHVKRKVLTEEETEKLKKVLKETDFKVKDFVKLKCNICEEGVKSWSGLRVHYAKVHKTKPVVYCICGFLIRSKSVLYKHVSDHKVESRKFRKEENSESKQQESKYSSLHVKDFVNFTCTVCHKQCSSWYTLRTHCEKAHKIRPIVHCICGITLKSKSVLYKHVQDHKNPDILACDKCPRITKTLAALNKHKMRHIPKAERKFCCSSCDKIFNTKDTLKSHERSHIPIEERKIYHCGICDLKFTTRSSAASHRRVVHDKIKSYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRTCAKPFKTYSNLKTHMDTHEDTSYTCYVCSRVLNSRRTLRKHLLVHEDKCRHVCHYCNKAFKRRQTLKVHMYTHTGDKPLTCKWCEERFAYASTLRSHRLRCHADKLAPPHYGYAHDAHLAALPAHPAHPAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00025449;
90% Identity: iTF_00288264; iTF_00025449; iTF_01359997;
80% Identity: -