Pahi019820.1
Basic Information
- Insect
- Parelbella ahira
- Gene Symbol
- -
- Assembly
- GCA_018244795.1
- Location
- DWME01022037.1:1-1856[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00089 0.064 14.4 2.9 1 23 110 132 110 132 0.96 2 10 6 4.2e+02 2.3 0.1 3 23 162 183 160 183 0.90 3 10 0.00089 0.063 14.4 0.1 2 23 205 226 204 226 0.95 4 10 6.7e-06 0.00048 21.1 1.7 1 23 230 252 230 252 0.98 5 10 0.0038 0.27 12.4 0.9 1 23 261 284 261 284 0.93 6 10 0.031 2.2 9.5 1.7 1 23 290 313 290 313 0.95 7 10 6.9e-06 0.00049 21.0 1.2 1 23 319 342 319 342 0.98 8 10 3.7e-06 0.00027 21.9 3.0 1 23 348 370 348 370 0.98 9 10 2.7e-06 0.00019 22.3 2.2 1 23 376 398 376 398 0.98 10 10 7.9e-06 0.00056 20.8 0.7 1 23 404 427 404 427 0.98
Sequence Information
- Coding Sequence
- CGACCAGATTACAAGAGCGCCACGGACCCAACGGAACCGCTGAAGCGTCTTCGTGAGAGGATAAGGTCTGGTGGGCAATGTGCGGAGGTGAACGCGGCAAGGAAGAGCATTAAATCCTATACCAAAGACTTGAACGCAAGGAAGGAAATGCTAATCAGTATAAAGAGGACGAaggaaaagtttaaaaaagcgCTCAGGAAAGaaaaaaaatcgGAAATAGTGCGCTTGGAAGGCAATAAGACCCAAAAGAGTACAAAAGCTTTTTCCAATACTGTTACAATAGTCGAAAATTCTTACGTGTGTCCTTTCCAATCGATCTTCAACGACTTCTACTGCGACTACTGCAGAGAGAAGTTCACCGATCACGAGAAACTGAGAGAGCATTACGTGATCCACGATCCGGTCACTTACAAAGACGCCATAATGGACAGCATGAGGAGATTGGGCAGGAAGAAGACCCAGCTAGACATCCAGCAGATAGACTGCAGGTTGTGCCCAGAAAAAATCAACGATATGGAGACGTTTAAGGAACATGTGACAAATGTCCACGGGAAGACCCTTTACCCTGTGGAGAACGAGTTTCTCCAATTTCGGGTGATAGCCAACAATTTGGAGTGTGTGGAGTGCGGGCAGACGTTCGCGCTTTTCCAGGGTTTGAAGAAACATATGGCGGAGCATTTTGGCAGGTATACGTGTGACATATGCGGCACCCACTTCTTCAACGAGAGCTACCTGATCGCGCACCAAAAGAACCACGACTCCAACGGCAAACCGGGGATGTACTCTTGCGAGGAGTGTGGCAGGGCGTTCAAGCTCAAGTACAGCAGAGACATGCACGTCACCACCAAGCACAGGAAGGAGGCGGCATTCCAGTGCATCAAGTGCGATGAAATGTTCTTCTCCAGCCGACAGAGATTCAAACACATGATGGAGATCCACGGCGAAAGGTCCACCTTTCGCTGCAGCCAGTGCGACCGCGTGTACGACAACAGGAAGACGCTGCTAGACCACATGAGACGGGTCCACGTGAAGACATTGAAGCACAAGTGCAATATGTGCGATAGGAGTTTCTACTTGCCGTCCCTGTTGAAAAACCACATGACAACCCACACTGGCGAGAAGAACTTCAAATGCGACTACTGCGGCAAGTGTTACCCGAGGCTGAATTCGCTCAAGGTGCACCTGGAGTCGCACGCGGCGGTGAAGAAGTTCAAGTGTCCGTACTGCAACGCGTCCTACGGACAGAACGTCAGTTTGAAGAATCATATAAAGCGTCAGCATCAGCACTGTGAGGAGGGAATGTGA
- Protein Sequence
- RPDYKSATDPTEPLKRLRERIRSGGQCAEVNAARKSIKSYTKDLNARKEMLISIKRTKEKFKKALRKEKKSEIVRLEGNKTQKSTKAFSNTVTIVENSYVCPFQSIFNDFYCDYCREKFTDHEKLREHYVIHDPVTYKDAIMDSMRRLGRKKTQLDIQQIDCRLCPEKINDMETFKEHVTNVHGKTLYPVENEFLQFRVIANNLECVECGQTFALFQGLKKHMAEHFGRYTCDICGTHFFNESYLIAHQKNHDSNGKPGMYSCEECGRAFKLKYSRDMHVTTKHRKEAAFQCIKCDEMFFSSRQRFKHMMEIHGERSTFRCSQCDRVYDNRKTLLDHMRRVHVKTLKHKCNMCDRSFYLPSLLKNHMTTHTGEKNFKCDYCGKCYPRLNSLKVHLESHAAVKKFKCPYCNASYGQNVSLKNHIKRQHQHCEEGM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01438281;
- 90% Identity
- -
- 80% Identity
- -