Basic Information

Insect: Parelbella ahira
Gene Symbol: -
Assembly: GCA_018244795.1
Location: DWME01019906.1:2109-5832[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.7e-05 0.0012 19.7 5.4 2 23 169 190 168 190 0.97

2 12 0.0037 0.26 12.4 2.1 1 23 197 219 197 219 0.98

3 12 0.00015 0.011 16.8 0.8 2 23 239 260 238 260 0.98

4 12 3.6e-06 0.00026 21.9 1.4 2 23 268 289 267 289 0.96

5 12 0.00063 0.045 14.8 0.5 1 23 295 317 295 317 0.98

6 12 3.3e-06 0.00023 22.0 3.1 1 23 323 345 323 345 0.97

7 12 3.4e-07 2.4e-05 25.1 1.0 1 23 351 373 351 373 0.96

8 12 0.00018 0.013 16.6 0.4 1 23 379 401 379 401 0.95

9 12 0.00015 0.011 16.8 0.7 1 23 407 429 407 429 0.96

10 12 0.0062 0.44 11.7 8.5 1 23 435 457 435 457 0.98

11 12 2.4e-06 0.00017 22.4 0.6 1 23 463 485 463 485 0.98

12 12 0.00012 0.0084 17.1 2.0 1 23 491 513 491 513 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.7e-05	0.0012	19.7	5.4	2	23	169	190	168	190	0.97
2	12	0.0037	0.26	12.4	2.1	1	23	197	219	197	219	0.98
3	12	0.00015	0.011	16.8	0.8	2	23	239	260	238	260	0.98
4	12	3.6e-06	0.00026	21.9	1.4	2	23	268	289	267	289	0.96
5	12	0.00063	0.045	14.8	0.5	1	23	295	317	295	317	0.98
6	12	3.3e-06	0.00023	22.0	3.1	1	23	323	345	323	345	0.97
7	12	3.4e-07	2.4e-05	25.1	1.0	1	23	351	373	351	373	0.96
8	12	0.00018	0.013	16.6	0.4	1	23	379	401	379	401	0.95
9	12	0.00015	0.011	16.8	0.7	1	23	407	429	407	429	0.96
10	12	0.0062	0.44	11.7	8.5	1	23	435	457	435	457	0.98
11	12	2.4e-06	0.00017	22.4	0.6	1	23	463	485	463	485	0.98
12	12	0.00012	0.0084	17.1	2.0	1	23	491	513	491	513	0.97

Sequence Information

Coding Sequence: atgAATGCCGAAAAAAGTTTTAACTTCGATCATTGTTGCCGAACCTGTCTTAAGGCGACCTCAaatcaaatgtataatatatttgcagaAATATGTCCTAGCTTGAGTATAGCTGATATTATAAACAAGAATGTCTTAATAGATATAAATAAAGAAGATGAATTACCAAAGAAATTGTGTATGAAATGCTTTACATGTGTCAAAAATTTTCATGAATTCTGTGATTTTGCAAAGGCTGTCGATGGAACATTAAAAGAACAAGCAAAGAATGGAATAAACAgaactgataataaattatctacaGACCAATTAGATAATTCACTGGCTGACATCAAAATGGAGAATGTTGGACATGATGATGgtgaatatgataatgatattacatCAGAtctagatattaaaaatgaatattgtcATGAGAATGATCATGAATtgaatggaaataataatattgagaatATTGAAGTACTTATAGATTCTAATGAGCTCTTAACATATAAGGTCAAATGTGAAATATGCAATAAGAAATTCAGAAAGCTGTCAAATTTAAACCatcataaaaagaaacataGTGCACACACAAAGTCTTATACCTGTGATGTCTGCTTAAAAATCTATACAGATCATGATAGATTTGTAAAGCATTTGAACTCACATcaaattaacattgaaatagAGAAGACAGATATGAAAGAGATGAAGAATCCGGAACAACAATGTCAAGTTTGCTCTTTAATGTTCCAGTCTAAGAATGCATTATCTGCACATATGAGGAAACATGCAAAGAAAGGCAGGATTCTATCATGTACAATATGTGGAAAGGTGTTTGCCAAAATGAGCCATTTGAAGAGGCATGAATTGTCTCATGAAGTCAACCACCCATTTAAGTGTTCATTATGCCCAAAGACATTTGCATTAGAAAATTCTTGGAAGGAACATGTGAATAAGCACAGCGGAATTAAGCCACATCCCTGTCCTATGTGTTCCAAGTCATTTTCTCATTTGACAACACTCACTACCCATATAAggatacatataaaagaaaaaccaTACTTATGTCCAACTTGTGGAAAGAGGTTTGATTCAAGCACAAACTTAAATCAACATATAAAGAGGCATCAAGGGTTGAAACTGTTTGCGTGTACACTTTGCCCAAGAAAATTTGTTAGTAAAGGTGAGTTGAAATCCCACAATGTAACTCATACAGGTGAAAGGTCTTTTGCATGCGAGCAGTGTGGCGCCACCTTCACCAAACGTACATCTCTTGCCAAGCACAATTTGAGGCACACAGGTGTGAAACCCCATCAGTGTGATACATGTCCGATGAAATTCACATGTAAAGATCACCTAAAGCGTCATTATCGAATACACACAGGTGAGAAACCGTACAAATGCGATATGTGTGAACGGGCGTTCTCTCAGAGCAACGATCTGGTGAAACATCGCCGGGCACATCTTGGCGATAATCTTTACAAaTGTTCTCAATGTACACAGAGCTTCAGACTTAAGACCGAACTTCGGCAGCATATTTCCGACCATTTTATATCACAGCAGCTCGAACTGATTAATGCCCAGGAGAAGACTGCAAATAATGTGATTGAACAGAAAGATATACCATTAGACGTTACAATGAATGGTGTGGTTGAAGCATTATCAGACACTAAATAG
Protein Sequence: MNAEKSFNFDHCCRTCLKATSNQMYNIFAEICPSLSIADIINKNVLIDINKEDELPKKLCMKCFTCVKNFHEFCDFAKAVDGTLKEQAKNGINRTDNKLSTDQLDNSLADIKMENVGHDDGEYDNDITSDLDIKNEYCHENDHELNGNNNIENIEVLIDSNELLTYKVKCEICNKKFRKLSNLNHHKKKHSAHTKSYTCDVCLKIYTDHDRFVKHLNSHQINIEIEKTDMKEMKNPEQQCQVCSLMFQSKNALSAHMRKHAKKGRILSCTICGKVFAKMSHLKRHELSHEVNHPFKCSLCPKTFALENSWKEHVNKHSGIKPHPCPMCSKSFSHLTTLTTHIRIHIKEKPYLCPTCGKRFDSSTNLNQHIKRHQGLKLFACTLCPRKFVSKGELKSHNVTHTGERSFACEQCGATFTKRTSLAKHNLRHTGVKPHQCDTCPMKFTCKDHLKRHYRIHTGEKPYKCDMCERAFSQSNDLVKHRRAHLGDNLYKCSQCTQSFRLKTELRQHISDHFISQQLELINAQEKTANNVIEQKDIPLDVTMNGVVEALSDTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00025399;
90% Identity: -
80% Identity: -