Basic Information

Insect: Parelbella ahira
Gene Symbol: ham
Assembly: GCA_018244795.1
Location: DWME01001150.1:14959-18474[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00088 0.062 14.4 1.1 1 23 32 55 32 55 0.93

2 8 2.7e-08 1.9e-06 28.6 0.1 1 23 61 84 61 84 0.96

3 8 1.2e-06 8.5e-05 23.4 2.4 1 23 90 112 90 112 0.95

4 8 5.5e-05 0.0039 18.2 6.2 1 23 118 140 118 140 0.99

5 8 0.0019 0.13 13.4 0.2 2 21 148 167 147 168 0.94

6 8 1.2e-08 8.5e-07 29.7 0.7 1 23 563 585 563 585 0.98

7 8 4.3e-07 3.1e-05 24.8 1.7 1 23 591 614 591 614 0.97

8 8 4.7e-06 0.00033 21.5 3.3 1 23 620 642 620 642 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00088	0.062	14.4	1.1	1	23	32	55	32	55	0.93
2	8	2.7e-08	1.9e-06	28.6	0.1	1	23	61	84	61	84	0.96
3	8	1.2e-06	8.5e-05	23.4	2.4	1	23	90	112	90	112	0.95
4	8	5.5e-05	0.0039	18.2	6.2	1	23	118	140	118	140	0.99
5	8	0.0019	0.13	13.4	0.2	2	21	148	167	147	168	0.94
6	8	1.2e-08	8.5e-07	29.7	0.7	1	23	563	585	563	585	0.98
7	8	4.3e-07	3.1e-05	24.8	1.7	1	23	591	614	591	614	0.97
8	8	4.7e-06	0.00033	21.5	3.3	1	23	620	642	620	642	0.98

Sequence Information

Coding Sequence: ATGATCTACAACTTTCTATTCGCGATACGCCTTGTTGATGAGATGAGGTTAGATCGTCATTTGATCCAGGCGCACGCGCAACGCGCAGCATCCTTTCACTGTGAGCTCTGCAACCGGGCCTACAGCTCTCGAACCTTGCTTCTTCGCCACCGGGCGCTCGCGCACACGGACATCAGGAAATATCCCTGCGAGAACTGCCCCAAGGCATTTAGCGATCCTTCCAACCTGCAGCGCCACATCCGCGCGCAGCACGCCGGCGCGCGCAGCCACGCCTGCCCCGAGTGCGGCAAGACCTTCACATCTTCTTCCGGCCTCAAGCAGCACACGCACATCCACTCCAGCGTCAAGCCCTTCCAGTGCAAGGTCTGCTTGAAGTCGTACACACAGTTCTCGAACCTATGTCGACACAAGCGAATGCACGTCGCGTGTAAAACGTTGGTAGAGTGTGGCAAATGTGGACAGCCATTTCAGACGTATGCATCTCTTACTAAACATAAGAGATTTTGTGATACTGCTACTGCTGCGAACGTTCGCCTTCGAGGACCATTGGTGCCAGGCATACCGCAAATTCCTCCATTACCCAACGTTGCAATGAATACCCAAAATAATTCAAACCCCTTTCCAATGTACAGGGGTCAAGCATTACCTCTGCCATACAACAGTTTTGCCCATTACCCAGCACTGTTCtcggcggcggccgcggctGCTTGCCCACCAGAATTTTTAAATCCATTGCTCTTCAATGTACAAGGCGCAAGGTTAGCGATGGAACACGATCTCGCTATGAATTCCAATTTGTTAGCACAAAAGCAACAGGAGGGACGTATGTCTGTTAAGAGTATGGATAGCTCCACAACACTTGAGGAAATCAAAAAGAGTAAGGATATGGAGTTCGATTTATCTAAGCGAGATGACGAAAATGTTGACAGAGTAACTCCGAAGACTCACAGTCATTACGTAAAACAATCGCCACCATCTGATGAAGCTCCTCAACAGAGACCCTCGCCAGTAATGCCGCCTCAGGCACCCATGGCTCCATTTAATTTCACAAACAATGACGTGAAACATAGCTCACCATTCAATTTGTCGCTTAaactgaataataatgaaaatatgggTAGCAAACCGGTATCTCCAAGTTTGCCTacaaatttgacaaaaaacGTTAGACATGAAGAAGGGAGATATTCAGATAACGAAGAAGAGATAAAGAAAGATCTTGGTGATCAACCATTGGATTTGTCAGTGAGTAGGAAACAAGGCGACAAGGAATCTGACGGCGACAACGATGATCGTTCCTTTCGTAACTCATCGGTTAAATCGTTTTCTCCACCAGAGAGCCCGATCGAACGAGAAAGCAAGACACCTGAAAATGACACCACAGATGTCGACGTAGAAGGGGTTGAACCAAAAAGGGAGGATTCCCCCCAACCGTTGGTTTCTTCACCCTTGGCTTTCCCGATGCCAGTCCACCCTCAACACAGTAATAGTTTGATAAATGCAATGTATCCCCAATACGAAATGGATTCGATTCTGTCCAGACGTTTCTCTACTCACACGCCCTACGTCCCAagttcgtttaattttttatctccACTTCTCGGCACTGATGGACCCGACCAGCAACAGAACGCATACGCAAAATTTCGTGAAATGAACACCGGCACTGGAAAGCTTCGCGATCGGTATGCTTGCAAATTCTGTGGCAAAGTGTTCCCGAGGAGTGCGAACCTAACTCGGCATCTTCGCACTCACACTGGAGAGCAACCCTACAAGTGCAAGTACTGTGAGCGCTCGTTCTCAATCTCATCCAATTTACAGCGCCACGTCAGGAACATCCATAATAAGGAAAGACCATTCCGGTGTCCGTTGTGCGACCGGTGTTTCGGTCAGCAGACGAATCTTGATCGTCACCTGAAGAAGCACGAGGCTGAAGGTGGGGATTCCCCGAGCTCGGCCGATACGGAGCGTGAAGACGCATATTTTGATGATATTAGGTCGTTTATGGGTAAAGTCACATGTTCTCCTAGACCCAGAACTCCACCTGCATCTTCTCCTAATCCAATTCCTTCTCATCCAGCACACCCTCCCCACCCTTCGAGAACTTCACTCGCTATCTCCACATAG
Protein Sequence: MIYNFLFAIRLVDEMRLDRHLIQAHAQRAASFHCELCNRAYSSRTLLLRHRALAHTDIRKYPCENCPKAFSDPSNLQRHIRAQHAGARSHACPECGKTFTSSSGLKQHTHIHSSVKPFQCKVCLKSYTQFSNLCRHKRMHVACKTLVECGKCGQPFQTYASLTKHKRFCDTATAANVRLRGPLVPGIPQIPPLPNVAMNTQNNSNPFPMYRGQALPLPYNSFAHYPALFSAAAAAACPPEFLNPLLFNVQGARLAMEHDLAMNSNLLAQKQQEGRMSVKSMDSSTTLEEIKKSKDMEFDLSKRDDENVDRVTPKTHSHYVKQSPPSDEAPQQRPSPVMPPQAPMAPFNFTNNDVKHSSPFNLSLKLNNNENMGSKPVSPSLPTNLTKNVRHEEGRYSDNEEEIKKDLGDQPLDLSVSRKQGDKESDGDNDDRSFRNSSVKSFSPPESPIERESKTPENDTTDVDVEGVEPKREDSPQPLVSSPLAFPMPVHPQHSNSLINAMYPQYEMDSILSRRFSTHTPYVPSSFNFLSPLLGTDGPDQQQNAYAKFREMNTGTGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDAYFDDIRSFMGKVTCSPRPRTPPASSPNPIPSHPAHPPHPSRTSLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00025403;
90% Identity: iTF_00025403;
80% Identity: -