Pahi012409.1
Basic Information
- Insect
- Parelbella ahira
- Gene Symbol
- -
- Assembly
- GCA_018244795.1
- Location
- DWME01010421.1:7477-10223[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 5.9e-05 0.0042 18.1 0.1 1 19 63 81 63 82 0.97 2 12 0.00014 0.01 16.9 1.2 1 23 90 112 90 112 0.99 3 12 4.2e-06 0.0003 21.7 1.8 2 23 160 181 159 181 0.98 4 12 1.3e-05 0.00092 20.2 0.7 2 23 189 211 188 211 0.96 5 12 1.5e-05 0.0011 19.9 4.3 1 23 217 239 217 239 0.99 6 12 0.0061 0.43 11.7 2.8 1 23 245 268 245 268 0.95 7 12 0.00027 0.019 16.0 0.5 1 23 272 294 272 294 0.98 8 12 1.3e-05 0.0009 20.2 3.1 1 23 300 322 300 322 0.98 9 12 5.1e-07 3.7e-05 24.6 2.4 1 23 328 351 328 351 0.96 10 12 0.13 8.9 7.6 2.5 2 23 362 380 361 380 0.95 11 12 0.00048 0.034 15.2 0.3 1 23 385 408 385 408 0.94 12 12 0.00011 0.008 17.2 1.7 1 23 413 436 413 436 0.97
Sequence Information
- Coding Sequence
- GAATCTGAGCCAATTGTAAAGCCGCCGGTCCTAGAGGAATCTCAACCCAAGGAAACACCTAGAAAAATTAGTTATGGGAAATCGGTAAAAACAGCAAAAGcgaaaattgtaaaaaagaaaCGTATCCTAACAAAAAAACTGATACCAAACTTAGAATCGCTCGTGAAAAGCGATGGAAGCAATCGTTACAGGTGCAATATATGTGGTACAGATTTCAATACGCTGGCTGCGTTGAGGAGACACACACCCGCGAAACATAAGGACGCCTACAAATGTAAGCAATGTCCAACACAGTGCGCCAATCCGGTCCAATATATTGCACATTTGAAAACTCATTCGAACAATACAGCCTCTTCAATTAGTCAAAAAACTTCCGATGGAAAATCCGACGTAACACGTGGAAGTGATAAGCCAGAGAAACAGACATCCAATGAGAAAAATAGCCAGCCGCCTGGAAGTGGTAAGTCAGAGAAGAGTCAATGCGATCTGTGTAAGAAGTTCTTTGCAGACAAGGGGACGCTGAGAAAGCACATCAAGCGACACTACGGTATGCAAAAGGAATGCGTGTGCGAAATATGCGGCGGTTCCTTCTACAACAGTACGAACATGAAAATACACATACGCACGGTGCACGAAAAGTTGCGTCCATACAAATGCAATGTGTGCTCAAAGACGTACACAATGAAAGCGCACTTGAAAGGACACTACAGGACACATACAGGCGAACGTCCGTACAAATGCGACAGCTGTTCCAGAAGGTTCGATAACctactaaaattaaaacgtcATAAATTAAACACGCATAGAGACGGctacaattgtaaaatatgcAATGAGACTCTAGATAAGAAAGGTGATTTTCTATCGCACATGCGAGGCCACGCCGGCCAGAAGGAGTTCAAGTGTCATATGTGCGTTAAGGACTTCTCGTCAAGGTTCGCCCTCAATCGCCACATACGCGACCATAAGGCTGTCAAATCGCACGAATGCGAGGTTTGCGGCAAGAAGTTTAAAAGCTCGGACGAGTTGAAGAAACATAAGCGTAACGTTCACAACCCTAACAAAGTGGTCCGAGAGAAAGTCAAGTGCAAGATATGCAAGAAGTACTTTGGAAACATGAAGAAGCATTTAAACTCTCATAAGAAAAGACCGTTCTCGTGCGAGCTGTGTGAGAAGAGCTATCCGGAGCGTAATGCTCTGAACAGACATGTGAAATTCGCTCACGACGGCGTGAAATTCACGTGTACAGTCTGCGACAAGCAGTATGTTAAAAAGcttaatttgaaaaatcataCCTTGAAagaacacaaaattaaatataaagaaccAAAACCTACCTAA
- Protein Sequence
- ESEPIVKPPVLEESQPKETPRKISYGKSVKTAKAKIVKKKRILTKKLIPNLESLVKSDGSNRYRCNICGTDFNTLAALRRHTPAKHKDAYKCKQCPTQCANPVQYIAHLKTHSNNTASSISQKTSDGKSDVTRGSDKPEKQTSNEKNSQPPGSGKSEKSQCDLCKKFFADKGTLRKHIKRHYGMQKECVCEICGGSFYNSTNMKIHIRTVHEKLRPYKCNVCSKTYTMKAHLKGHYRTHTGERPYKCDSCSRRFDNLLKLKRHKLNTHRDGYNCKICNETLDKKGDFLSHMRGHAGQKEFKCHMCVKDFSSRFALNRHIRDHKAVKSHECEVCGKKFKSSDELKKHKRNVHNPNKVVREKVKCKICKKYFGNMKKHLNSHKKRPFSCELCEKSYPERNALNRHVKFAHDGVKFTCTVCDKQYVKKLNLKNHTLKEHKIKYKEPKPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -