Pahi005742.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Parelbella ahira
Gene Symbol
-
Assembly
GCA_018244795.1
Location
DWME01003656.1:6453-14217[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 50 2.7 1.9e+02 3.4 0.1 3 23 18 39 16 39 0.94
2 50 0.0033 0.23 12.6 0.1 1 23 61 84 61 84 0.92
3 50 0.00015 0.011 16.8 2.2 2 23 90 111 89 112 0.94
4 50 0.0076 0.54 11.4 1.8 1 23 117 140 117 140 0.95
5 50 2 1.4e+02 3.9 0.3 2 23 146 168 145 168 0.93
6 50 0.0073 0.52 11.5 2.4 1 23 172 195 172 195 0.95
7 50 2.6 1.9e+02 3.5 2.6 2 23 202 223 201 223 0.96
8 50 0.013 0.95 10.7 0.9 1 23 269 291 269 291 0.95
9 50 0.0047 0.33 12.1 0.8 2 23 319 341 318 341 0.95
10 50 0.1 7.2 7.9 2.4 2 23 362 384 361 384 0.95
11 50 0.017 1.2 10.3 3.1 1 23 389 411 389 412 0.96
12 50 2.8 2e+02 3.4 6.4 1 23 416 439 416 439 0.89
13 50 0.01 0.74 11.0 2.7 2 23 442 464 441 464 0.95
14 50 0.014 0.97 10.6 1.6 1 23 539 562 539 562 0.96
15 50 0.0015 0.11 13.6 0.2 1 22 634 655 634 657 0.89
16 50 9.1e-07 6.4e-05 23.8 0.5 1 23 662 685 662 685 0.96
17 50 3e-05 0.0021 19.0 1.2 1 23 690 713 690 713 0.95
18 50 0.003 0.21 12.7 1.4 2 23 719 741 718 741 0.93
19 50 8.7e-05 0.0062 17.5 3.4 1 23 745 768 745 768 0.97
20 50 0.008 0.57 11.4 2.4 1 23 813 835 813 835 0.96
21 50 0.05 3.6 8.9 0.0 3 23 864 885 862 885 0.93
22 50 0.025 1.8 9.8 0.3 2 23 906 928 905 928 0.95
23 50 5.3e-05 0.0038 18.2 3.4 1 23 933 956 933 956 0.97
24 50 0.0021 0.15 13.2 0.3 1 23 961 984 961 984 0.98
25 50 0.12 8.4 7.7 2.7 2 23 987 1009 987 1009 0.95
26 50 0.023 1.7 9.9 0.3 2 21 1013 1032 1012 1033 0.96
27 50 0.0093 0.66 11.2 3.4 1 23 1090 1113 1090 1113 0.96
28 50 4.6 3.2e+02 2.7 0.5 3 23 1142 1163 1140 1163 0.94
29 50 6.6e-05 0.0047 17.9 0.6 2 23 1186 1208 1185 1208 0.96
30 50 0.00043 0.03 15.4 0.1 2 23 1214 1236 1213 1236 0.91
31 50 0.11 7.5 7.8 4.2 2 23 1241 1263 1240 1263 0.93
32 50 0.014 1 10.6 2.1 1 23 1268 1291 1268 1291 0.95
33 50 0.00016 0.011 16.7 6.0 1 23 1295 1318 1295 1318 0.97
34 50 0.0062 0.44 11.7 2.0 2 23 1325 1346 1324 1346 0.96
35 50 0.012 0.85 10.8 2.1 1 23 1352 1374 1352 1374 0.96
36 50 0.003 0.22 12.7 2.3 1 23 1414 1436 1414 1436 0.98
37 50 0.04 2.8 9.2 0.0 2 23 1464 1486 1463 1486 0.91
38 50 0.0084 0.59 11.3 2.0 2 23 1507 1529 1506 1529 0.94
39 50 6.6e-05 0.0047 17.9 3.3 1 23 1534 1557 1534 1557 0.97
40 50 0.96 68 4.8 1.2 1 23 1562 1585 1562 1585 0.92
41 50 0.017 1.2 10.4 1.7 2 23 1588 1610 1587 1610 0.93
42 50 0.016 1.2 10.4 1.1 1 23 1650 1673 1650 1673 0.93
43 50 0.88 63 4.9 0.3 3 23 1703 1724 1701 1724 0.95
44 50 7.7e-05 0.0054 17.7 0.7 2 23 1747 1769 1746 1769 0.96
45 50 6.6e-05 0.0047 17.9 0.1 2 23 1775 1797 1774 1797 0.94
46 50 0.016 1.1 10.5 3.7 2 23 1802 1824 1801 1824 0.91
47 50 0.0012 0.083 14.0 0.8 1 23 1829 1852 1829 1852 0.94
48 50 0.0025 0.18 13.0 8.5 1 23 1856 1879 1856 1879 0.97
49 50 0.014 0.99 10.6 0.7 2 23 1886 1908 1885 1908 0.94
50 50 1.2e-06 8.9e-05 23.4 0.8 1 23 1913 1935 1913 1935 0.98

Sequence Information

Coding Sequence
ATGCGCAACAGACAGGACGCTAAGATCAAAATCGATGTATCATCCCTGTTTTGTAAACTGTGTTTCGAAGCTATGAAAGACTTGGATAGTCTCATCGATCACTTGATCTCCGAACACAAGTCGCATTTCGACAAGACTGTTGATAGCAACATCCAAACCTTCTCTCTTATCAAAGACCATTTTCTTTGTCCGTTCTGTGGCGAGGTCTTCCGATATTTTGGCAACGTGCTCAAACACATAGGTCGAGCACATTCGAACAACAACACCGTTTGCATGCATTGTGGCGCCACCTTTCGGAGCTCGCCGAATCTAAGGGCACACATATATAAGCACCACAAGGCGGCGAAATACAAATGCAGCAAGTGTAACTTGGAGTTTGGCAGTAAGAAGTACTACCAGACACATTTGGGGCGTGTGCACGATAACAAGTTGGTGGAGTGTGGGACGTGTCGTGACAAGTTTTCTTCGGTTTATGAGAAGCAGAGGCATATGATCAATGTGCATCAGTCCGGCCACAAATGTTCGTATTGTGGCAAACTGTTCACTCGAAACTCGATAATGGTCGATCATGTGAGACGAACGCATTTGAAGGAGAAGAATGTCCAATGCGAGATTTGCTGTGAATTCTTCTTCGATGTTCATCTCTTGAGAATGCACATGGTCAAGCATTATGGCGAGAGGAATTTCCATTGCGACGTTTGCGaTGTAAACGGATCCGGAAACACGCAAAGCTTTAATAGACGAAGGAACCTGCAGATATTGTTCAACAACACCTCTCTATTGCCGTTTAAATGGCGCGGAAAATACTTGTGTTTTTACTGCGGCGAGGATGTAGCACATTACGACGAATTAAAGAAACATACTAAAGCTCACGGGCCTTGTTCAGACAGAGATAGAGCTATACGTCTTGTCAAAGCACCGGATGCAGAAGTCAAAATCGATGTATCCGATGTCACTTGTGAGATTTGTAGCAAATCTTTTACCGATTTTGATCAAATTGTCGATCATTTGAAACATGAACACAAGTTGCCTTACGATTTAAATGTCAAGCTCTCCTTAGCAATATATCGCCTAGTGGACTTGCAGTGTCTGCACTGTGAAGAGAAATTCGATTATTTCAACAAACTCATCAAGCATGTGAATAGTAGGCATCCGAGCGAGAGTTTCGAATGTTCTAGATGTCTCCAGATGTTTAACAAAAAGAGGGACTTGGACGCTCATACGCGGATGCATCACAAGAAGGATCACAGGTGCCTCAAGTGTTCGTTGACGTTTTGCTCGTACGCTGCCTTCAAGAAACACAACACGAACTCCCATATTTCCACTTGTAATGTATGTTTCAAGAGTTTCACCTCCCTTAAAAAGAGATTGAAACACATGAAATTGGAACATGTGGATGCGAAGCTGAAATGTGGCTTCTGTTTGGAAGTAATGAGCACGAAACAGAGTTTTTTGCGTCATGCGAGCAAATGCAATGTGGAAATTATAAACGCTGAAAACGAACTCCCGGTGGATGATGAAGAGAGAAAGCCGTCCGTTCTTCAAATAAGGAACAACGTAGCTTGTGTTCTGAACATGTCTAGTGCTATACCGTTTAAGTATTTCATGAGTAGGTTTAGGTGCTTTTATTGTCCTAGGGATTTCAACGAGTGCGCCGATCTAAGAGAGCACACGGTCACAGAACATCCCCACtgtgatattaaacttaaaagtaTGAAACTACGCAATAGGCACGACGGTTGTATTAAAATAGACATAGCTTCATTGTCATGCAAGCTATGCTTTGAACCGATGCAAGATTTGGATTCGTTGATAGAACATCTCATATCCAATCACAAAGTGTGTTACGATAAATCTATAGATTGCAACATGCAGCCCTACAAGCTGGTCAAAGACAACTTCGCGTGCCCGCTGTGCGGGGAAGTGTACAGATATTTCAGTTCGTTACTGAGACACGTCGGTCAATTTCACACGGATAATAAGTACATTTGCGTGTACTGTGGCAAGTCGTTTCGGAACGTTTCCAATTTGCGTGCTCACATATCTAGCAAGCATAACACGGCTGTGTACAAATGCGGCAAATGTGACCTTGAGTTCACATCTAACAGCCACTTGCAAACGCATTTGGGGAGCGCGCACGGCGCCAAGGTCATCCAGTGTACAGAGTGCCACGAGAAGTTCATATCCAGTTACAGAATGCAGAGGCATATGGTGAACGTTCATAGATCCGGTCACAAGTGTACGTATTGCGGCAAGTTGTTCACTAGGAATTCACTGATGGTGAATCACGTGAGACGAACGCACCTGAAAGAGAAAAACGTGGAGTATGAAAACGCGCAAAGCAAGTACGAGAACTTCACCTCCGAGAAACGGAgggaaaatttgaaaatactcTTCAACAATACATCCATTATACCTTTTAAATGGAGGGGCAAGTACTTGTGCTTTTATTGCGGCGTGTTTTACTCGGATTATACCGAATTCAGAAAGCATACAAAATCGCACGGTCTTTGCACGACCAAGGATGTCGCTCTCAAACGAATCAAACGCACTAATGACGAAATTAAAGTAGATATATCAAGCGTTAATTGTGAAATATGCAGTGAACCATTTACGTCCTTGGATGAGATAATTAATCatctgataaataaacataagctTGAATATGACAAAACTGTACACATTCCTTACCAAGAATATATGCTTGCGTCAACGCGCTGTCAATTCTGCGATGAGCAGTTTGCGTACTTCGGTTACCTCATCATCCATATCAATAACAATCACCCACAGAACTGTTTCACCTGTGATTATTGTGGACTGACGTTTAATAAACAAAGAGATTTATGTTCTCATATAAGACAAAATCACCGTGAGGGTGGCTATCCGTGTGACGATTGCTCTGATGTTTTCGAATCCCAAGTGTTACTGGAGAGACATAAAAAGACCTATCATTTCAGACAGTGCAAAACTTGCCATTTGAGGGTGGCGTCGTACAGCCTACTCAAAAAACACAAGCAACTCGAACATCCCGACAACAAATGCCCGCATTGTGCAAAAGAATTTCAGTCACGACAGGGCCTCATAATGCATTTGCGCGCATGTCCAGCCAAAATAGTGGTGATAAGAGAATGTGAACAAGCAATGAAGCCACCTCCCCTAGAAATAACATTGGCGCCCACTGTAAAGAAGATTCTCACACAGAAACGACAAAACATGGTTACCATCCTAACAATGTCCACGGCGACGCCCTTCAAATTTTTCGCAAAATTCTCCTGTTTCCATTGCTCGAAAAAGTTTACAGAGTTCGACGATTTAAAAGAACATACAGTAACCGAACATCCTCTTTGCGATTTAAAGTCGAAATGTATAAAACGGTGCAAAGGTGAAAGGGCTATTGTAAGGATAGATGTACATGCTTTAGCTTGTAAAATCTGTTGCCAGTCGACGGATGATTTAGATACCTTGATAGACCATTTAATCAGCAAACACAACGCGAACTACGACAAATCAGTAACTGGTTGCTTTGAACCATTCAAGCTGATCAAAGACAACATTCCGTGTCCGCATTGTTCTAAAGTTTTCCGATATTTCGCTACACTGGTCAGGCATATCAACTCATTGCACAGCAACAACAAATGGATATGCGACTTTTGTGGTAAGACCTTTAGGAACGCCAACAATTTGGGTGTCCACGTGAGCTATGCGCACACCGGCTCGTGTGAGTGTAACGTTTGTGGACTTAAGTTCAAAAATCAGTTGTGCTTAGGTCGGCACAAAGCGAAAATGCACGACGCGAAAGACTTTAAGTGTCCCAAATGTCCCGAGCTATTCCAGTCGCAGTACCACAAACAGAAACATCTGATCCAGGCCCACGATATCGGACACAAGTGCACTCATTGCGGGCGCATGTTCACCAGGAATTCCTTCATGAAGGATCACGTTAGACGCGTTCATTTGAAGGAGAAAGATGTGTCGTGCCAGCTTTGCAATGAGAAATTTTTTGATAATCACCTATTGAAATTGCACATGGTAAAACATTATGGCGACAGAAAGTTTGCCTGCAATGTATGTGGGAAGAACTTTTTGAGAAGAAGCAACTTAAGCTGTCACATGGATATGCATAAGAAATATGATGAATTCGCGCAAACCAAGTACGGGCGCTACTCCTGGGAAAGGAGCGAAAATTTGAAAATCCTCTTCAACAGTACTTCCATTATACCGTTTAAATGGCGCAGCaagtacatatgtttttattgcgACAAGCCATacgcaaattatattaaatttcgaaaGCACACAAAGTCACACGATCCATACACGAGCGAATTTCAAGCTTTCGAGTTATTCGAACGAACCGACGAGGAAATCAAAATAGATATCTCTGTAATTGAATGCGAAATATGCAATGAATCGTATACGTCTCTAGAAGAAATCATCAATCATTTGATTGATGATCATGATCACGATTATGATCCAACAGTCGACATTCTGTTTCAAGAGTACATGCTGGCGGAATTACGATGCCATATTTGCGGAGAACAGTTTATGTACTTTGGTCATCTCATCACCCATGTCAATAACAATCACCCTGAAAATTTTTACATGTGCGACGATTGCGGCCTAATGTTCAGTAAGCGAAAGGATTTATGCGCTCACATCAGACACAATCACCGTCAAGGTGGCTATTTATGTGATAAGTGTCCAGATATCTTCGATTCTCAAGTGTCGCTGGACAAACACAAAAAGGCGTGCCATTTTATACAGTGCAAATATTGCCATTTGAAATTGGCAACCTACAGCCTTCTCAAGAAACACGAACAGCTCGAGCATCCGGACGATCGTGTGATCAAGCTGGTCCCCAGACCAAAGAAGCTGCTGCAAAAACGTCAGAATTTTGTCACTATCTTGAACATGTCTACTGCGACGCCCTTTTCGTTTTTCTCGAAATTCTCCTGTTTTTATTGCCCGCAAAAGTTTACGGAATTCGAAGAGCTTAAAGAGCACACTTCTCTAGAACATCCAGTTTGCGATTTGCAATCCAAATGCATAACTAGGTTCAAGGAAGTTGACAATGCGACAGTGAGGATAGATGTGAATTCGTTGGCTTGTAAATTGTGCCGCCGTCCGATGAGGGATCTAGATACGTTGATCGAACATTTGACCACCAAACACGACGCCGTATATTATAAGTCGGTGACGGGCTGCTTCGAAACCTTTAGGCTGATCAAGGACAACATTCCGTGCCCACATTGCTCCAAAGTCTTCCGTTTTTTCGCCACCCTCATAAGGCACATAAATTCTTTGCACACCATCAACAAATGGATCTGCGATTTTTGTGGTAAAAGTTTCAAGAAGGCCAGTAACTTGGGCGTTCATGTGAACATCGCGCACACTGGCACATGCGAATGTGAGGTTTGCGGGCTAAAGTTTAAAAACCAATTCTGCTTGGCGCGCCACAATGCTAGAATGCACGACGTGAAGAACTTCAAGTGCCCAAAGTGTCCTGAGATGTTTCAATCGCCATACCACAGGGAGAAGCACCTGATCGAAGTGCATGACATCGGCCACAAGTGCACGCACTGCGGTCGCATGTTCACGAAGAATTCGTGCATGAAAATGCACGTGAGACGCGTGCACTTGAAGGAGAAGGACGTATCATGTTCGCTGTGCAGTGAGAAGTTCTACGAGAACTATTCACTGAAGTTGCACATGGTGAAAAATCACGGCGATAGGACTTTCACTTGCAACATTTGCGGTGAATACTTCATGAGGAAAAGCAACCTGAAGGTCCACATGGACATGCACAAGGAGGATGACTATTACGAAGAGGTGGAAGACGATGAGGAAACTATTTGA
Protein Sequence
MRNRQDAKIKIDVSSLFCKLCFEAMKDLDSLIDHLISEHKSHFDKTVDSNIQTFSLIKDHFLCPFCGEVFRYFGNVLKHIGRAHSNNNTVCMHCGATFRSSPNLRAHIYKHHKAAKYKCSKCNLEFGSKKYYQTHLGRVHDNKLVECGTCRDKFSSVYEKQRHMINVHQSGHKCSYCGKLFTRNSIMVDHVRRTHLKEKNVQCEICCEFFFDVHLLRMHMVKHYGERNFHCDVCDVNGSGNTQSFNRRRNLQILFNNTSLLPFKWRGKYLCFYCGEDVAHYDELKKHTKAHGPCSDRDRAIRLVKAPDAEVKIDVSDVTCEICSKSFTDFDQIVDHLKHEHKLPYDLNVKLSLAIYRLVDLQCLHCEEKFDYFNKLIKHVNSRHPSESFECSRCLQMFNKKRDLDAHTRMHHKKDHRCLKCSLTFCSYAAFKKHNTNSHISTCNVCFKSFTSLKKRLKHMKLEHVDAKLKCGFCLEVMSTKQSFLRHASKCNVEIINAENELPVDDEERKPSVLQIRNNVACVLNMSSAIPFKYFMSRFRCFYCPRDFNECADLREHTVTEHPHCDIKLKSMKLRNRHDGCIKIDIASLSCKLCFEPMQDLDSLIEHLISNHKVCYDKSIDCNMQPYKLVKDNFACPLCGEVYRYFSSLLRHVGQFHTDNKYICVYCGKSFRNVSNLRAHISSKHNTAVYKCGKCDLEFTSNSHLQTHLGSAHGAKVIQCTECHEKFISSYRMQRHMVNVHRSGHKCTYCGKLFTRNSLMVNHVRRTHLKEKNVEYENAQSKYENFTSEKRRENLKILFNNTSIIPFKWRGKYLCFYCGVFYSDYTEFRKHTKSHGLCTTKDVALKRIKRTNDEIKVDISSVNCEICSEPFTSLDEIINHLINKHKLEYDKTVHIPYQEYMLASTRCQFCDEQFAYFGYLIIHINNNHPQNCFTCDYCGLTFNKQRDLCSHIRQNHREGGYPCDDCSDVFESQVLLERHKKTYHFRQCKTCHLRVASYSLLKKHKQLEHPDNKCPHCAKEFQSRQGLIMHLRACPAKIVVIRECEQAMKPPPLEITLAPTVKKILTQKRQNMVTILTMSTATPFKFFAKFSCFHCSKKFTEFDDLKEHTVTEHPLCDLKSKCIKRCKGERAIVRIDVHALACKICCQSTDDLDTLIDHLISKHNANYDKSVTGCFEPFKLIKDNIPCPHCSKVFRYFATLVRHINSLHSNNKWICDFCGKTFRNANNLGVHVSYAHTGSCECNVCGLKFKNQLCLGRHKAKMHDAKDFKCPKCPELFQSQYHKQKHLIQAHDIGHKCTHCGRMFTRNSFMKDHVRRVHLKEKDVSCQLCNEKFFDNHLLKLHMVKHYGDRKFACNVCGKNFLRRSNLSCHMDMHKKYDEFAQTKYGRYSWERSENLKILFNSTSIIPFKWRSKYICFYCDKPYANYIKFRKHTKSHDPYTSEFQAFELFERTDEEIKIDISVIECEICNESYTSLEEIINHLIDDHDHDYDPTVDILFQEYMLAELRCHICGEQFMYFGHLITHVNNNHPENFYMCDDCGLMFSKRKDLCAHIRHNHRQGGYLCDKCPDIFDSQVSLDKHKKACHFIQCKYCHLKLATYSLLKKHEQLEHPDDRVIKLVPRPKKLLQKRQNFVTILNMSTATPFSFFSKFSCFYCPQKFTEFEELKEHTSLEHPVCDLQSKCITRFKEVDNATVRIDVNSLACKLCRRPMRDLDTLIEHLTTKHDAVYYKSVTGCFETFRLIKDNIPCPHCSKVFRFFATLIRHINSLHTINKWICDFCGKSFKKASNLGVHVNIAHTGTCECEVCGLKFKNQFCLARHNARMHDVKNFKCPKCPEMFQSPYHREKHLIEVHDIGHKCTHCGRMFTKNSCMKMHVRRVHLKEKDVSCSLCSEKFYENYSLKLHMVKNHGDRTFTCNICGEYFMRKSNLKVHMDMHKEDDYYEEVEDDEETI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-