Pful032963.1
Basic Information
- Insect
- Parascotia fuliginaria
- Gene Symbol
- -
- Assembly
- GCA_963082885.1
- Location
- OY720200.1:7402952-7405137[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.04 4.3 9.0 0.8 2 23 62 83 61 83 0.95 2 11 0.0003 0.032 15.7 2.3 1 23 89 112 89 112 0.97 3 11 0.00063 0.067 14.7 3.0 1 23 126 148 126 148 0.99 4 11 0.0035 0.38 12.3 1.5 1 23 154 176 154 176 0.97 5 11 0.0048 0.52 11.9 1.2 1 23 183 206 183 206 0.97 6 11 1.5 1.6e+02 4.1 1.0 3 21 216 234 215 235 0.92 7 11 0.84 91 4.8 3.1 1 23 327 349 327 350 0.94 8 11 0.11 12 7.6 0.8 1 20 358 377 358 379 0.91 9 11 0.42 45 5.8 4.9 1 23 411 434 411 434 0.94 10 11 0.9 97 4.7 0.4 1 23 439 461 439 461 0.96 11 11 3.5e-05 0.0038 18.6 3.4 1 23 467 490 467 490 0.98
Sequence Information
- Coding Sequence
- ATGTTTGACACAGAAGAGCCGGAGCAGAAGACATCTGATGACATGTTTGCGAGTGTGTGGGTGAAGGTTGAAGTAGAGGATCATGATGAGGATGAGGATTTTAATATGGAGGAGATGGCAGCGGCAGCCAACACATACTCAAAACGCAAGAAGAAAAATccacaaaaaattttaaaaactctgAAATGCGAAGCATGTGACTACACAACAGTATACAAAAACTGCTTACAGTTACATATTCTTGGACACACAAACTTCAAGCCATTTTCTTGTGATACTTGTAATTATGTCACTAGATACCCGACATCATTACACAGACATATTCTCACTCAGCatgaatataaaaacaataaaaacattgagGAATTACCTCAATTTAAATGTGATCAATGTTCATACACCTCTTATTACAAATGGAACTTAAATGCTCATAAAAGAAAGCATAAATTGGAAAAAGAGTTTATATGTCCGTTATGCCCTTATAGAACTGCATAtcgacataattatataaagcacaGTAAGGTACATAATAAAACTGAGTCACTATATAGATGTGACAAATGTCCGTTTGTTACTAAATATGAAGGGCACATTACTAGACATTTGGCTAAGATACATAATGAGGTATCGGAAAAAGCTAATCATTGTGACTTATGTGATTTTTCCACTAAAGTAAAATGGAgattaaacatacataaacagCGTAGTAAACAAAAAGatgtaattaaatgtatttattgcgATTTTGAGACATATTTTATGTGTGAgagtaaaaaacataaaatgatACACTACAGTGAAATTTATGTCATGTCTAAAAAAACTATAGATGTGAAAAAACCTGAAAAACATGAAAGACCAGTGATTCCCGAGGTCCAAACGGTACATGAGAAGAACAATCATTATACTATAGACCCGATTTGTGAAGTCGATTGGAATAATATTCAAGTTTTAGAATCAAATAGTAAAGACAAGCCGTTTCAATGTATAATGTGTGATTACACAGCTCGTTTCAAAGCATCAGTTCAAAGGCATTTTCAGCGACATCACACAGGCAGCCAAAATAGGCCTTTTAAGTGTCTAAACTGTGATTTCTCAACAAAAACTAAAGATCAAATAGCACTGCACAATAAACGTTCTCAATCGGATATTGAAATATATTGCAGAAATTGCAATTTCTCAACTTATTTCAAATGTCAGTACGCTATGCATCAAAAATGTCACTATGAACATAAATGTACAGCTTGTGactttgtatgtaaaaataaatatgacatttCTAAGCATTTTTCTATGGTACACCTGGGTAATGCTTTCAAATGTCGTTTTTGTGAATTCATGGCTGCTCGCACTGAGACGTTAGCTTCTCATGAAACTATACATACGGGTAATAAGCCATTTAAATGTTCTCATTGTGATTATACGTCGGTTAGAAAGTCCTTGTTAGTGAATCATATTAAACGTTACCATAGCGACATAAAAACGGACCCTGTAGTTATTAATGATAGTAAAATACAATCTTTAAaagttttacctgaaaaagaTACATTGAATGATTTAGTAAATTCCAATGATGGGAATGATAAATCTGTTACTATTTAA
- Protein Sequence
- MFDTEEPEQKTSDDMFASVWVKVEVEDHDEDEDFNMEEMAAAANTYSKRKKKNPQKILKTLKCEACDYTTVYKNCLQLHILGHTNFKPFSCDTCNYVTRYPTSLHRHILTQHEYKNNKNIEELPQFKCDQCSYTSYYKWNLNAHKRKHKLEKEFICPLCPYRTAYRHNYIKHSKVHNKTESLYRCDKCPFVTKYEGHITRHLAKIHNEVSEKANHCDLCDFSTKVKWRLNIHKQRSKQKDVIKCIYCDFETYFMCESKKHKMIHYSEIYVMSKKTIDVKKPEKHERPVIPEVQTVHEKNNHYTIDPICEVDWNNIQVLESNSKDKPFQCIMCDYTARFKASVQRHFQRHHTGSQNRPFKCLNCDFSTKTKDQIALHNKRSQSDIEIYCRNCNFSTYFKCQYAMHQKCHYEHKCTACDFVCKNKYDISKHFSMVHLGNAFKCRFCEFMAARTETLASHETIHTGNKPFKCSHCDYTSVRKSLLVNHIKRYHSDIKTDPVVINDSKIQSLKVLPEKDTLNDLVNSNDGNDKSVTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -