Pful028692.1
Basic Information
- Insect
- Parascotia fuliginaria
- Gene Symbol
- -
- Assembly
- GCA_963082885.1
- Location
- OY720194.1:6827847-6839289[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5e-05 0.0054 18.1 5.0 1 23 263 285 263 285 0.98 2 13 0.0099 1.1 10.9 3.4 1 23 293 316 293 316 0.94 3 13 1.6 1.8e+02 3.9 0.5 1 23 320 343 320 343 0.87 4 13 0.0018 0.2 13.2 3.0 1 23 418 440 418 440 0.99 5 13 0.00074 0.079 14.5 2.1 2 23 449 471 448 471 0.96 6 13 0.063 6.8 8.4 4.2 1 23 475 497 475 497 0.98 7 13 0.00081 0.087 14.3 2.5 1 23 502 525 502 525 0.98 8 13 0.59 63 5.3 1.9 3 23 531 552 530 552 0.87 9 13 5.7 6.1e+02 2.2 0.1 3 20 573 590 572 592 0.89 10 13 1.7 1.8e+02 3.9 0.2 2 23 639 661 638 661 0.92 11 13 1.4e-05 0.0015 19.9 0.5 1 23 670 692 670 692 0.98 12 13 0.0015 0.16 13.5 0.8 3 23 700 720 698 720 0.96 13 13 0.53 57 5.5 9.2 1 23 726 749 726 750 0.96
Sequence Information
- Coding Sequence
- ATGTACGATTTAAAAGCATGTGCGGTGTGTTTTAGCACTGATAGTAAATTATACAGCTTGGACAGCGAACCATTAAGGCGCGTATTCCATTTGATTTCGGGTGTTCAGacaAGCAGAGGCAGTGGTTTGccaaattatttatgtttccaGTGCTTAGCTTGCCTGAAGAGTTCTAAAAAGTTTCGAGACAAATGTCAACGAGCTCATTACACTTTACAAcagatattaaaaaacaataaagagGTCACAATAACAAATCTAACGGACTTTAATCGTGATTTGCTTGAGATCATGCCACCTTTATCATATATGAGTTTAGATAAAGCTCATTATGAACAAACTAAGTTTCAATGGACAATGAACAACCAGTTATCAGAAAGTAATATGTCAAAAGTGAAATCAGTACCGATTCTCCATTGTAGCACATTGACTGTAGATGATACATTTACCACAATAACTGCGTTACATGACAAAgacaatgataataaaaataatattgaggaAACGGTCAATGAGATTGTCGATTCAAATTTTGGTATAGGTAAAGAGCAATATCTGGCACAAACATCAAATGAATTAGCAGACTCAATTATGGATGACAATAATTTTGCTAGTGATAATGAACCAGAAGAATCAACAGAGGACAATACGCTTTGTAAGGTTGTGAAAACTGAAAGTATTGTTGATGGGTCTAATTTGGACAAGGAGTATGCAATGATGATTCCTATATCAGTTAAAGAGGCTAAAGCCACTATAGAAGTGTACAAATTTTTCAGTCATGGCAAATATCATTGTGAGACATGTAATAAAGcgttttacaataaaaagcgTTTGAAACTGCATATGAGAATGCATGATAAGCATGTTAGCGGCTATTATCACTGTGGAATATGTAACTATTACTATAAAACAGAGTTTTTATTGAAAACACACATGACTGAGAaacatatgtataaatatgtgtGTAGGAAATGTCCAGAAGTCAGTTTTGATAGAAGATCAGCGAAACAGCACTTCATTTGGACACACTTACAAAAAGGCAGTAACAAGGATGCCAACTGGTACGAATCAAGGCCTAGTTGGTTAAGCACAAAGGGCTGTAAAAGGGCCAAAGGCGAAGTAACATTAAAGCCTGTTAGGAAAATAAAGAAAGTTCCAGAAGACTTCCCAGTTTATGAGCCTATACGCCACGAGGAACAATACACTTTAGTTCAACAAAGACAGCATACAAAGAACTATAAAGAGTCGAGATACCAGTGTAATCTGTGCTACAGGGGGTTTAGACTAATGGTGACGTTTACTAAGCATATGAAGAAACATGATCCGTTGCACTCGGGTCCGCTACAATGTGACGTGTGTAAGCTACACTTCAAAGATCAGCGCAAGCTATACATGCATATGAACATCATGCATCTATTCAAATACTCCTGTCAGACGTGCAATTATGTGTGTTATAAGAGaaGTCAAGCTCAGATGCACTACCGATGGCACAAAAAAGTTACGTATCAATGTCCTCATTGTAAAATGGAGTTCATGTCTAACTCAACGCGACTAACTCACATAAGAGTAAAGCACCCTTCTATGAACATTTGTAACCTATGCGGACACAGCTTCGTCAGCGAAAATGGACTGTATTGTCACAAGCAGATGGCACACACCAAAGAGgaAATAGTCTTAAGTTCATCGATGAGTGTAAATAAAACAGACCCCGCGTATTGCGCTGACTGTGATATACAGTTCCTTAACGAGACTGCGTTTACTACACACCTCGGTAGTTCAAATAAGCATACTACTACTAATGTGTCTTCAAAGCCGAACCGTCGAGGTGAGAACGAGAGCGGCCGCAAGCCGCGCGGGCGCTCGCGGCGCCGCGCGTGCTCGGAGATCGTCAACAATGGCGTCGCTACGTGCACCACGTGTGAGATTTGTAACATAAAATTAGTAAACGACGTACAAGCTCGCAAACACTACGATTCGGAACATCCAGATACTGAATTTCTAAAGAGATACATGTGTGATGTGTGCGGACATACTACCAGGGTATACGCGAACTTGATAGTGCATATGCGCACTCATACCAAGGAAAAGCCGTATGGATGTCCACACTGCGACCGTCGGTTCAACATGCCTAGCAACAGGGATAGACATCTTGTTgtacacaCTGGAGAAAAACGACATCAATGTCAACACTGCAACCGTCGCTTCGCACAGAGGATCACGTGCAAGTTACATATACAGACTGTTCATCATAAGATACCGTACGCGCCGTGGAACAAGAAAAATCGAAGGAGACGTAAGGCTTTAGAAACAGCCAGTATACAAGCAACATCGATGTTACCGACCACGCCTCACAAGCTAACGTTCGAAACTCCGGGTGATTATCTCAACGCTTACATCACTTATAATGATgagtga
- Protein Sequence
- MYDLKACAVCFSTDSKLYSLDSEPLRRVFHLISGVQTSRGSGLPNYLCFQCLACLKSSKKFRDKCQRAHYTLQQILKNNKEVTITNLTDFNRDLLEIMPPLSYMSLDKAHYEQTKFQWTMNNQLSESNMSKVKSVPILHCSTLTVDDTFTTITALHDKDNDNKNNIEETVNEIVDSNFGIGKEQYLAQTSNELADSIMDDNNFASDNEPEESTEDNTLCKVVKTESIVDGSNLDKEYAMMIPISVKEAKATIEVYKFFSHGKYHCETCNKAFYNKKRLKLHMRMHDKHVSGYYHCGICNYYYKTEFLLKTHMTEKHMYKYVCRKCPEVSFDRRSAKQHFIWTHLQKGSNKDANWYESRPSWLSTKGCKRAKGEVTLKPVRKIKKVPEDFPVYEPIRHEEQYTLVQQRQHTKNYKESRYQCNLCYRGFRLMVTFTKHMKKHDPLHSGPLQCDVCKLHFKDQRKLYMHMNIMHLFKYSCQTCNYVCYKRSQAQMHYRWHKKVTYQCPHCKMEFMSNSTRLTHIRVKHPSMNICNLCGHSFVSENGLYCHKQMAHTKEEIVLSSSMSVNKTDPAYCADCDIQFLNETAFTTHLGSSNKHTTTNVSSKPNRRGENESGRKPRGRSRRRACSEIVNNGVATCTTCEICNIKLVNDVQARKHYDSEHPDTEFLKRYMCDVCGHTTRVYANLIVHMRTHTKEKPYGCPHCDRRFNMPSNRDRHLVVHTGEKRHQCQHCNRRFAQRITCKLHIQTVHHKIPYAPWNKKNRRRRKALETASIQATSMLPTTPHKLTFETPGDYLNAYITYNDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -