Pful031162.1
Basic Information
- Insect
- Parascotia fuliginaria
- Gene Symbol
- -
- Assembly
- GCA_963082885.1
- Location
- OY720198.1:8593020-8595672[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 8.7 9.4e+02 1.6 1.3 3 23 201 222 200 222 0.87 2 9 2.8 3e+02 3.2 3.1 1 23 257 279 257 279 0.95 3 9 0.034 3.7 9.2 0.0 3 21 287 305 286 306 0.96 4 9 9.8e-06 0.0011 20.4 1.0 2 23 330 351 329 351 0.96 5 9 1.2e-06 0.00012 23.3 1.0 1 23 359 381 359 381 0.98 6 9 0.0003 0.032 15.7 2.0 1 23 387 409 387 409 0.96 7 9 1.6e-05 0.0018 19.7 2.2 1 23 415 437 415 437 0.97 8 9 0.0027 0.29 12.7 2.4 1 23 443 465 443 465 0.98 9 9 2.5e-07 2.7e-05 25.4 2.0 1 23 471 494 471 494 0.98
Sequence Information
- Coding Sequence
- ATGGAAAACTTGTACTGTCGCTTTTGCGCGGAGCCTAAAAGCTCTGAAAAGCTGCTAAACTTGCAGAACGACGATGAAAAGCTTGATGAAATCATATTAAAACTGGCATTTGTGAACGCCGTTTACGTCGacgtaaaaaataatgataatatgttGCCGAAAACAATCTGTTTAGTCTGCTATAACAACTTAAATAAAGCTTATGAGTTTCTCGATAGCGTGAAGCGTGCACAGGACGTATTAACAAACATATTTACTGCCTCGGACGATACTAAATACGAGATATCGGATGATGATCGAGCAAGTGATTTCGACGACTTCCTTTGCAGCAATGATCCTTCTGATATCAAATTGGAAGGTAATGAGCCTTGTAAGTCTCCTGAGCGCTCACGGGTAGATGTACGAGTGGAAGTTAAGCGAGAAATGAAGGAGGAACCGGATTTAGACGAACGAAATGCTTTTGACGACACTTTAAACGTTCAAGATATACTGGATGCCGCTATATGTAATACGTCTAATTCTAATGTCACAATATACGCGAAAGAGATCTCAGATTTGAGTGAGAAGGATGTTAAGACATGGGAGGATTATCCTTGGCTGTGTAGATATTGTAACATAGAGTTTTTGAACATAGACACACTAAGATCGCACTGTAAAGTGGTTCACGGTAAATGTGCAGCATTCCTGTGTATTGACTGCAAGATTGGGCGGATTGAGGACTTCACATCATTTATGAAACATGTTAGAAAACATAGGAAAGCTTTAAGACACCATTGCTACTACTGCGACTTTACCACAGACAAACCGGAATACTTGCCATTGCATGTTAAGAGCCACTTTACAAAATCACAAGTAGCTTGTCCATTTTGTGGTGAAATACTTAAAAACGAGGAagcatttaaaatacatttacgaGACTATAatgcaacaaaacaaaaacgcaGACCGAGGAGAAAACCGGGCACACCTATCACAATAGAAGACTTAACTTGTAGCTTgtgtaaaaaagtatataagaatCCTAACAGCCTACGAGACCATATGAAGCTACATACTATGGACCGTAAAAGGAACTATACTTGTGATCGCTGCGGCAAAATGTTCTACAATAAAGGTACACTCACATCCCACATATTATCCCATGATAAAAACCGTCCGCACATCTGCAAGATATGtaacaaatcatttttataccCGAACATGTTACGAAGACATGTTCAAATGCATTCTGGAGTAAAACCATTTTCATGTGAACAGTGTGGTAGGTGCTTTAGACTGCAATATCAGTTGAACGCAcacaaaataatacatacagATGCCATGCCATATGTCTGTTCATTTTGCAATAAAGCATTTAGATTCAAACAGATTTTAAAGAACCATGAACGGCAACATACAGGGGCTAAGCCATATTCTTGTCAAAACTGTGGCATGGAGTTCACGAATTGGTCAAACTATAATAAGCATATGAAAAGACGGCATGGAACTGATActtctaaaaagaaaattacaccGGAAGGTGTATTTCCTGTTAATCCGGAGACAGGTCAGATAATGCAGGTGGAAGATCCTGTTGGAACTGAGGAATGGAAGACCAAGATCATGGTACCCTGTAAAAGAGGGAAGAAGAAAGTTATAAAACAGGCAAATATATAG
- Protein Sequence
- MENLYCRFCAEPKSSEKLLNLQNDDEKLDEIILKLAFVNAVYVDVKNNDNMLPKTICLVCYNNLNKAYEFLDSVKRAQDVLTNIFTASDDTKYEISDDDRASDFDDFLCSNDPSDIKLEGNEPCKSPERSRVDVRVEVKREMKEEPDLDERNAFDDTLNVQDILDAAICNTSNSNVTIYAKEISDLSEKDVKTWEDYPWLCRYCNIEFLNIDTLRSHCKVVHGKCAAFLCIDCKIGRIEDFTSFMKHVRKHRKALRHHCYYCDFTTDKPEYLPLHVKSHFTKSQVACPFCGEILKNEEAFKIHLRDYNATKQKRRPRRKPGTPITIEDLTCSLCKKVYKNPNSLRDHMKLHTMDRKRNYTCDRCGKMFYNKGTLTSHILSHDKNRPHICKICNKSFLYPNMLRRHVQMHSGVKPFSCEQCGRCFRLQYQLNAHKIIHTDAMPYVCSFCNKAFRFKQILKNHERQHTGAKPYSCQNCGMEFTNWSNYNKHMKRRHGTDTSKKKITPEGVFPVNPETGQIMQVEDPVGTEEWKTKIMVPCKRGKKKVIKQANI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01492286;
- 90% Identity
- -
- 80% Identity
- -