Pful032356.1
Basic Information
- Insect
- Parascotia fuliginaria
- Gene Symbol
- -
- Assembly
- GCA_963082885.1
- Location
- OY720199.1:6667495-6679863[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.1 11 7.7 1.1 1 23 234 256 234 256 0.95 2 12 0.08 8.6 8.1 0.0 2 23 285 307 284 307 0.93 3 12 0.15 16 7.2 2.0 2 21 335 354 334 355 0.93 4 12 0.0083 0.9 11.1 0.5 1 23 415 438 415 438 0.89 5 12 0.22 24 6.7 0.1 3 23 467 488 465 488 0.91 6 12 0.033 3.5 9.3 0.2 3 23 512 534 510 534 0.94 7 12 0.00047 0.05 15.1 0.6 3 20 541 558 539 562 0.90 8 12 0.01 1.1 10.9 0.8 1 23 567 590 567 590 0.97 9 12 0.00031 0.034 15.6 0.2 2 23 596 618 596 618 0.94 10 12 0.0001 0.011 17.1 4.8 1 23 622 645 622 645 0.97 11 12 0.00015 0.016 16.7 0.6 2 23 652 673 651 673 0.96 12 12 0.0023 0.25 12.9 2.3 1 23 679 701 679 701 0.97
Sequence Information
- Coding Sequence
- ATGGAGTTCGACGAGATAGTAGTGAAGGAAAGCCCGGGGCTGTGCCGGTGCTGCCTTTCCGAAGGGTGTTACAAAGACTTAGGGTCTGAATACACTTGGATGAATGAAACGGAGGTTTATGCTGATATGCTCTTGGAATGTTTTGATATCagtATTACACAACACAATGAAGGTCCAAATGGTCCCAACCGGCTTATATGTGAGGTGTGCATCACAAGACTACGTGATGCTTGTAACTTTAAGAAACAAGTACTGGACTCGGAGAAGAAGTTCATTGATATGATGGGACGTGGAGAATTCAGGCCCAAGATGCTAATCTACCAGACGCAAATGAAATGTGAAGACTCAGCTGTGGAGGCAACTATTGAGGGAGCGCAGGTGGAATATTTGGAGGATGAAATTGAATTTGCTGATGATCCAGAAGAATTAAAAGACGAAACCATACCCTCAATATCAGACATCACAGTAAGCTCGTTACCCATTAAAGGCAAGCGGGGTAGACCAAGGAAGAATGCAGTAAAGGCTGAGAAAAAGACCAAGGTAGCCAAGTTGGAAGAAAAGGCTAAAAGCTCCAAGACTATTGCTAAAGATGTTAAACCGGTGAAATATGGCGGCGTATCGTCGTCGATGCGCAGACGGCGAAACCTACAAATTATATTCAACAATACTACAATAATACCTTTTAAATGGCGCGGAAAATATTTGTGCTTTTACTGTAGTAAAGATATACCAGAGTATACTGAGTTACGTAAACATACTAAATCTCATGGCAATTGCTCCACTAAAGATCATTCGCTTAAAGTACTAAAGGGTGGTCAAAATATGGAGATAAAAGTTGATGTTTCTGATATCAGTTGTGAGGTTTGCTCAGAACCATTCCCGAGCTTCGATGAAGTAATAAATCATCTTTTTGTTAAACATAAGTTAGAATACGATAGGTTACCTTCCGCTGTTTTGAAGCAAAAACATATAGAAATCGAGCATCCAGATGATGGATCGTTACAATGTGATAGTTGCTTTAAAGAGTTCCATACAAAGCAAGGTTTGCGTATGCATAACAGAAAATGCAAAGGCGACAGTATTTTCGAAATTGGGATAAAGAAAGAAGAATACGTTGCTATGGATCTAGACTTAAATTATGACGATGAAGTCAAAAGACCGAGCGTCAAACAAATTAGGgaaaatattgttatagttATAAACATGTCGACGGCTATAcctttcaatttttataagaATAAGTTTAACTGCTTTTACTGCTCAAAAGACTTCCCTGACTCGGATTTAATGAGAGAACACACGGTGTTAGAGCATCCAGTGTGCGATGTCAAACAAAAATGTATCCGAAAATGTCGAGAATCCGTCGCTTGCGTCAAAATCGATGTTTCCTCTCTAGCTTGTAAGGTATGCTTCGAATCTATGTCGGATTTGGACAACTTACTCGATCATTTAATTGCGAAACACGACGCAAACTACGACAAGTCCATCACTACATGTTTACAGCCATATAGGCTGATTAAAGACCATATGGCTTGCCCGAATTGTCCTGGTGAAGTTTTTCGATTCTTCGGAACCCTTCTTAAACATATGAACAAGaaacatactaataataatataatttgcgtTTACTGCGGTCAGACTTTCCGCCGCGATCAAAATTTACGCGTACATATTTGGCGTCATCATAGAGATGGACGTTTTAAGTGCAATATTTGTGGTGCAGAATGCAACATTCCTTCAAGACTGTACATGCATATGGCCAGATTTCATGGCGTTAAAGCCGCAAAATGTCCTAAATGTCCAGAAAGTTTCGCGACCCAATATTTACGTCAGAAGCATTTGATTGAGGCTCACAATTGCGGGCATAAATGCACTTATTGCGGGAAGCTGTTTACTCGGAATTCCTTCATGAGAGATCATGTTAGACGAACTCATTTGAAGGAGAAAAATGTTGAGTGTTCTATATGCAATAtgaagttttttaataatattctgttGAGGAGGCATATGGTCAAACATAGTGGGGAGAAGAATTTTCATTGTGATATCTGTGGAGAAAGATTCTTTTGGAGGAAGAGTCTTCGAACTCATATGGCTAGGCATAATAAACATCTTGAATCTGTGCAGATTTAG
- Protein Sequence
- MEFDEIVVKESPGLCRCCLSEGCYKDLGSEYTWMNETEVYADMLLECFDISITQHNEGPNGPNRLICEVCITRLRDACNFKKQVLDSEKKFIDMMGRGEFRPKMLIYQTQMKCEDSAVEATIEGAQVEYLEDEIEFADDPEELKDETIPSISDITVSSLPIKGKRGRPRKNAVKAEKKTKVAKLEEKAKSSKTIAKDVKPVKYGGVSSSMRRRRNLQIIFNNTTIIPFKWRGKYLCFYCSKDIPEYTELRKHTKSHGNCSTKDHSLKVLKGGQNMEIKVDVSDISCEVCSEPFPSFDEVINHLFVKHKLEYDRLPSAVLKQKHIEIEHPDDGSLQCDSCFKEFHTKQGLRMHNRKCKGDSIFEIGIKKEEYVAMDLDLNYDDEVKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDLMREHTVLEHPVCDVKQKCIRKCRESVACVKIDVSSLACKVCFESMSDLDNLLDHLIAKHDANYDKSITTCLQPYRLIKDHMACPNCPGEVFRFFGTLLKHMNKKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMARFHGVKAAKCPKCPESFATQYLRQKHLIEAHNCGHKCTYCGKLFTRNSFMRDHVRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCDICGERFFWRKSLRTHMARHNKHLESVQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -