Pful009996.1
Basic Information
- Insect
- Parascotia fuliginaria
- Gene Symbol
- -
- Assembly
- GCA_963082885.1
- Location
- OY720178.1:2649703-2658162[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.27 29 6.4 5.5 1 19 25 43 25 47 0.91 2 15 0.056 6.1 8.5 0.2 1 23 68 90 68 90 0.96 3 15 0.00042 0.045 15.2 0.1 1 23 117 139 117 139 0.96 4 15 4.8 5.2e+02 2.5 1.4 5 23 147 166 144 166 0.91 5 15 3.1e-05 0.0033 18.8 1.0 1 23 256 278 256 278 0.98 6 15 0.0023 0.25 12.9 0.4 1 23 284 306 284 306 0.97 7 15 0.0014 0.15 13.6 3.4 1 23 312 334 312 334 0.97 8 15 0.00055 0.06 14.8 1.0 1 23 340 362 340 362 0.98 9 15 0.0045 0.48 12.0 4.9 1 23 368 391 368 391 0.97 10 15 5.9e-05 0.0063 17.9 2.8 1 23 397 420 397 420 0.98 11 15 0.16 17 7.1 1.3 2 23 428 449 427 449 0.95 12 15 0.00013 0.014 16.8 3.1 1 23 455 477 455 477 0.97 13 15 0.00017 0.019 16.4 2.4 1 23 483 506 483 506 0.98 14 15 1.5 1.7e+02 4.0 1.1 2 21 510 529 509 530 0.93 15 15 1 1.1e+02 4.6 0.4 3 10 535 542 534 545 0.88
Sequence Information
- Coding Sequence
- ATGCTTCAACAAGTTCTAGTCATGAATAGCCAAATAAAAGAATGTGTGATAAAGATGGAAAAACTAGAGTTACATAAGTGTGAGAGATGTCCGAAACTGTTCTTTCATTCCAATGACCTGAGAACACATGATAAATACCATGATGATTATGATTACAATCATgCTGTCAGTgcttatgtaaaaatagaaagagTGGACTTATTTGATTGTGACAACTGCAGACAAGGTTTCTTGACTAAGTCTGCACTCTTGATACATAAGATAGTCCACATACAACAATCTGTcAATAATGCAAGGTACCAGAAGAAAATTAACCAATCGTATGAAGACACCAGTATTGCTAAACCTTACAAGTGCCCAGAATGTAACTATAGGTTTGTGGCCGAAGAGACCCTCGAAGCACATTCTATAGTACATCAACCATACCCTCATATCTGTCACTGCGGTGTCGGATACTACAAACTGCAAGATTTGAATCAACACAAACTATTAGTGCACAAACCAAAACCTTTAAAAACTGAAAATAACAATTCaatcaaaaatacaattaaagttttaaaaaccaAAGTGCCatctaaacataaaattagtCAGCAAGTGAATGAACAAATGAAGATAGCGTTGTCGAAAATATCGCTACCGCCTTTAGACATTGAAATAAAACGCAATGGCAGTAAGCACCAATGTCCCGATTGCCTCAAGTGGATGGGATCAAAATGCGCAGTCATAACACACTACCGAAGTGTGCACAGAGGCGAGCGACCCTTCCCCTGTCACTTGTGCAACAAATCGGTTAGTCAACAAGCTGCACTCtacttacatattaaaaaaCACCTAGGACTAAAACACTACGAGTGTCAATATTGTGATAAACGCTTCTTAGAGATAAATATGCTAATACGTCATGAACGCGTCCACACTGGGTATAAGCCGCATGTTTGTTCTTTTTGTAAGAAGGCCTTCAGTGACCCGAGTGCTCACAAGCGACATGAAAGGATTCATACAGGGGACAAAAGATACCGCTGTGCTCTGTGTCCTTCTGCATTCACAGACCACAGCGCTTTGTACGCTCATAAGAAACGACATGCTAACCTAAAAGACTATAAGTGTGACACATGTAGCAAGACATTTTATTGTAGAAGTTTCCTCAAAAAACATATTTCTGTAGTACATAAACATCAGTATGATTTCAAGTGTGAATTATGTGAAAAAAAATTTGGCACAAAGCATAATATGATGTCTCATATACAGCGCGTCCACACGCATCCGGGCCAAACTACTACATGTCATCTATGTTTCAAAAAGATATCCCCATTTGGTTTAAAAAGTCATATTAGAATTGTTcaccaaaaaataaaagaatttatttgtgATTATTGTTATAAGGCGTTTCCATTTAAACATGCATTAGTGCATCATATGAGTATGCATTTGAATGGTTATAAATTCGAATGTCATGATTGTGGTCACCTTTTTAGTACAAAGCAGCTAATAGCCCAACATATCCGAAGAATACACTTGAGTACTAAGTGTAAGCTGTGCTACGGATCTTTCTTAAGAAAAAGCGACTTTGACAACCATCAATTAAAGATAAGCGAGCCTTGTGATATATGCGATAAGAAGTTTGGGAGCGTGGgtcgccgcgccgcgccggccGCGCCGCTCGATACGCACGGCGCGCGCGTACCGTGCGGCATTGAACCACCCCAACCACCAATATTCTACCTCACTCTTATCCCGTCATTCTCCTTTTAA
- Protein Sequence
- MLQQVLVMNSQIKECVIKMEKLELHKCERCPKLFFHSNDLRTHDKYHDDYDYNHAVSAYVKIERVDLFDCDNCRQGFLTKSALLIHKIVHIQQSVNNARYQKKINQSYEDTSIAKPYKCPECNYRFVAEETLEAHSIVHQPYPHICHCGVGYYKLQDLNQHKLLVHKPKPLKTENNNSIKNTIKVLKTKVPSKHKISQQVNEQMKIALSKISLPPLDIEIKRNGSKHQCPDCLKWMGSKCAVITHYRSVHRGERPFPCHLCNKSVSQQAALYLHIKKHLGLKHYECQYCDKRFLEINMLIRHERVHTGYKPHVCSFCKKAFSDPSAHKRHERIHTGDKRYRCALCPSAFTDHSALYAHKKRHANLKDYKCDTCSKTFYCRSFLKKHISVVHKHQYDFKCELCEKKFGTKHNMMSHIQRVHTHPGQTTTCHLCFKKISPFGLKSHIRIVHQKIKEFICDYCYKAFPFKHALVHHMSMHLNGYKFECHDCGHLFSTKQLIAQHIRRIHLSTKCKLCYGSFLRKSDFDNHQLKISEPCDICDKKFGSVGRRAAPAAPLDTHGARVPCGIEPPQPPIFYLTLIPSFSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -