Pful013669.1
Basic Information
- Insect
- Parascotia fuliginaria
- Gene Symbol
- -
- Assembly
- GCA_963082885.1
- Location
- OY720181.1:16616917-16624319[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.2 2.4e+02 3.5 0.4 2 23 6 27 5 27 0.96 2 13 0.8 86 4.9 0.4 1 23 1005 1028 1005 1028 0.92 3 13 9.3e-06 0.001 20.4 2.2 2 23 1147 1168 1146 1168 0.97 4 13 0.00018 0.019 16.4 2.5 1 23 1174 1196 1174 1196 0.98 5 13 0.012 1.3 10.7 3.0 2 23 1203 1224 1202 1225 0.95 6 13 0.15 17 7.2 0.5 5 23 1238 1256 1237 1256 0.96 7 13 0.02 2.1 10.0 1.1 3 23 1263 1284 1262 1284 0.96 8 13 0.0079 0.85 11.2 0.1 3 23 1303 1322 1302 1322 0.98 9 13 0.00025 0.027 16.0 0.3 1 20 1328 1347 1328 1350 0.89 10 13 0.0013 0.14 13.7 0.0 1 23 1358 1380 1358 1380 0.97 11 13 0.021 2.2 9.9 7.9 1 23 1386 1408 1386 1408 0.98 12 13 1.6e-05 0.0017 19.7 0.7 1 23 1414 1438 1414 1438 0.95 13 13 0.0036 0.39 12.3 4.2 1 23 1444 1466 1444 1467 0.95
Sequence Information
- Coding Sequence
- ATGGACCAGCTCGTACAGTGTCCCGTGTGTACCTTGTTCCTGCACAATGGTATGACACTGGAGTCACATCTGGACACACACCCTAAGGATCAAGTCATCAAAGCATTGTGTAATCTGACAACACCTAAAGTTCCCAGTTATGGCAGCAGAACTCCCACTCCTTTACATTCTGAACGGTCATACAGAAGCAGATCACGGACACCTGCCACAGATGAGAGCAGATGGAATTGTTCCCACAGAAGTGATGATCGGTACTGGCGCAGAACACCTAGTAGAACTCCTAAGACTAATCTAATGTCAAATGCCTCTAGAAATGGAACACCAGATATCCGCATGGTTGatatgaattttgaaaacagtAGTGGTGGCCCTGGTAGTGCAGCACAACTGTCAGGAACTCCGTTTGTAATGAAAGCTGACAAGATCCAGCAGACTTACCAGTGTCCACCCGTATCTGATTTTGATtctcaatatatttattatgaccAGCAAGAAGACAGGGAGGTTAAATATTCCCGGAGCGCAGAGTATAATTCAATGGCTGGTCCAAACATGTTTGCTTACAACAATGTGATGCCAACTGTGGGGCCAGCAGTGAAGTTATTACCAGCCATGCCTAAAAGAGGTAATGatcttacaaaaattttaccaAAACCAAATAATATACTGCTTAAAAATATGGGTGGTGTGCAATATATAAGTCCAGGATCTAAACCAATGCATGTTATGATGCCCAGTGCATCTACATTTGTTCAGAAAAATGTTCAAAACAATATGATCATGACAGGTAGCGTGCCCAACCTGCAGATTCAAATAGACACCAAAACAGGAGCACCTCCATTAGCCAACAGCCAGCTGAACCAAATGCCTTCTGGTGCTTTCACTCCAGGCACAACTGTTGTTACCCAGAACTCACAAATCATTTACAGGGAAATGGTTAACAATATAGATGGTAAACCTTTTATAACTAGCATGCCCACTATCATAGGTGCTCATGATAATGTCACAAATGTAGCTCAAGCCAGCTCATTGTACCAGAATGTAATGGTTGTTGATCAGTTTGGCAACACCTCATGTATGTATGCCAGTCCTCAACAAATTATACCCAAGTGCCCGACAACTGTTTACAATGAAACACCATCTCTAGCGCCTAACTCAATACATGTAGAAAAAGCTGCTAATGCGAATGACCCTAAAACTCTTATTATTGAGGTTGGTCCCATTGTACCTCCAGCGCAAGACCAACACAGTGAGTCCTCCCGCTCCACATCACACTCAAACACAAATAGTCCGGTTACAAAATCTGACAAAAGAATAATTGAAAACATTGATTCAAGTGTAACCCCAAAAAGTGAAACCCCTGGTTCAAGTAAAGGTTTGAAAATTCTAAGTAACATAAAAGTTGAAGTTCCAGTACAGCATCATAAAAATATGGTGAACACAGTAATGGACCTCACAGGACCTAATGATGCCGAGTATCCTGTAGAACGGGTGCCTTCCCCAGAAAAGATATTACCAGATTTAGATGACAATGACAATCCTGAAATATTGTCCAATGAGTGTATACAACCATCTGATTTAAGTGCTGACAGTGTACCATCCTCATTTGCTGTGATAAAGAGTAAATCTTCTTCAAaagatgtaaataaaagtattgtagAAAGCAAAGTGGAGTCTGAGTTCTCTGACAGTTGCCCTGTGCCAGATTTAATCTGCAATGAGAAACCCTCAATATCACCTTGTAGTGAGTTGTCAGAGAATGGTGATAATTCAACCGATCATACCTCAATATCTCCTAAACCTGTGAGTAGTCAAGTTAGCCATAATACTGTAGATCCTCCAGAGAAGAAAATTCAGCTTCCACAGAAGCCATACAGACACAACACATTAAGACTGAACAATATTTATGTGAAGAAACACAAGAAAgttttacagataaaaaatgctaAGGGGTTTCCTGCAAGTAGTACAAGTAAAAAGCAAGAGCCCATAGCTTCATCATCGAATGTTAAGGCACCCGAAAATTTTACAATGAATAAATTACATCAAACAGATAAAAGTGAATGTAAGGAGAAATCTAGTGTTCTACAAACTATATCAGTGGAGGAGATCAAAGAGAACGACGACAATAACGAGTTTGATGCTGACACGGAGGAGCAGTCCATGGACATAGAGCCGGTCGCGCCTTCGAGCATCAACCACCAGAGTGGGTTCTCTACCACTGCAGAAATAGTACAAGTAAAGGAGGAAATTAACACAAGCAATGAAGGAGGATTTAGTAATCACACGGTGACGTCAGACCGCGACCTAGCACCGTTAGAGAGTTTGCGACCCATCAACGTCGTACCCTACGCAAACATGTCGGGCGATTTCGAAGAAGACTCCAATGATAGAGAATTATTGGACCTTGAAACAGCATCCAAAAACAAACAGTTTGTTAGTATGATGAACGAGAATTACTTCGGCGATAATATTTACGCGGATTACTTTACCCCAGATCGAGTGGAGACATTTGATGCGGAGCGTGAGGCGGCAGGGTTCAAGGATGCTCCCAAAGAtggtatgtataatatttggGGTGAACCGTCTCAGAAAGAGAACGAGAATGAATTTGTTTTGCCAAACTTTATACACGAGAGCTATAAAATAGCGGAAAGTAGTGGTATAGATTATTCGGAAATTGGTAGAGAGAGACAGGGCGACGGCGAAGGTGATGGGTGCGAGCGAGATAGTAAGGCTGATGTGTTGAGCGAAGGGCGCAGCGAGAGCGAGGCGCCGCTCAACATCTGCGCCGACGAGCGTATGCCGCCGCGCGGAGAGCTCAGCGGACAGGAGAGCAATGGAGATATGGAGTCACCTTGGGGAGGGATGTATACGGACGTGCCGCCTACGGAGCCCTACGATCTCATAGCCAGAGAGAGCTGGGTGTCGGATGGCTCAGAGGTCGACGTCAGTGAGAAGAGGGAAACATTCGAGGACGAGCTGCAGTTCCCGAAGACATTAGGGCGCGCGTACACGTGCGCTTTGTGCGGCGTGAAGGCACACTCGCTCAAGGAGCTGCGCGCGCACAAGACGCTGgtgcacgcgcacgcgcacgcgtcgcacgcgccccccgcgcccgccgcgcccccCGCGCACAAGCTCGCGCGCGCGCCGCACACCTACAGCCGCCTCGTCACCGACCGCAAGATCAAGAAGGAGGAGAAGTCGCACGACAGCGTCACTTTAACGAGTAACCTCTTAGGTATAGACTCGAAGGAGCCGATTACTTCGACGATCCTGCAGGTGTACGACTCCCTGGAGGAGGCCAAGCCGAAGATCGAGGGCTTGATCAAACAAGAGACTAAAAGAAGACGGAAGGACTACGTATGTCCTACGTGTAAAGTGGACCAGGGGTCAGATGCGGCGTTCAACGCTCATCTCAAGATACATCCTTTGGAGTGCCTCACGTGTGGAAAGTGCTTCTTTAGAAGAGCGAACTTAGCACTGCATATGAAAACACATTTAGGAATTAAGAATTACAAatGTGACGTGTGCGAAAAGAGGTTTATAACTCGTCAGAAGCTGATGGAGCACCACAACGTGCACACGGGGCGGCAGCCCGTCAAGTGTACCATGTGCGACGACACCTTCCGCAGATACTCCAACATGGTGCAGCATAGGGACCGCCACCACCTGGCCAAGCGCGCGAAGGTGCGCGACTTCGTGTGCGAGTGCGGCGCCGTGTTCCACTCGCGCGCCAAGCTGGCGTGGCACCGCGAGACGCACGACGGGCGGCCCAAGGCGTGCCTCTACTGCAGCGACAAGTTCGTGCACGCGGCGTCGCTCACGCGCCACGTGCGCCGCTCGCACAACGAGTACTTCCTGTCGGCGCGCCTGCGCGGCAAGGCGGGCGAGAACGTGGCGTGCCCCGTGTGCAAGCAGGTGTACCTGCGCGCCAACCTGCGCGCGCACGTGCGCACGCACTCGGGCGCGCGGCCGCACGCGTGCGTGGTGTGCGGCAAGGCCTTCAGCACGGCGTGGAACCTCAAGCTGCACCGCTGGACGCACGTGTCGCGCTCCGCCAAGCCCTTCCGCTGCGCGCTGTGTCCCGCCGCCTTCGTGCGCCGCGCCGAGCTCACCAGCCACGTCAACGCGCACCGCCAGGTGAGGCCCTACACGTGCAACCACTGCGGCTGCCAGTTCGTGCGCAAGTACAACTGCGCGCGCCACGTGCGCGAGCACGAGCAGGCCAAGCGCTTCGTGTGCGGCGTGCCCGAGTGCGGCAAGAGCTTCCACCGCTCGTACTACCTGTCCGAGCACATGAAGGTGCACAGCGGCGCGCGCCCCTTCGCGTGCCAGGTGTGCGGCAAGACCTCCAGCAACAAGTCCAACCACAACAAGCACGTCAAGATACACCACGCGCGCGAGCCCGTCGCCACCGAGGCCTAG
- Protein Sequence
- MDQLVQCPVCTLFLHNGMTLESHLDTHPKDQVIKALCNLTTPKVPSYGSRTPTPLHSERSYRSRSRTPATDESRWNCSHRSDDRYWRRTPSRTPKTNLMSNASRNGTPDIRMVDMNFENSSGGPGSAAQLSGTPFVMKADKIQQTYQCPPVSDFDSQYIYYDQQEDREVKYSRSAEYNSMAGPNMFAYNNVMPTVGPAVKLLPAMPKRGNDLTKILPKPNNILLKNMGGVQYISPGSKPMHVMMPSASTFVQKNVQNNMIMTGSVPNLQIQIDTKTGAPPLANSQLNQMPSGAFTPGTTVVTQNSQIIYREMVNNIDGKPFITSMPTIIGAHDNVTNVAQASSLYQNVMVVDQFGNTSCMYASPQQIIPKCPTTVYNETPSLAPNSIHVEKAANANDPKTLIIEVGPIVPPAQDQHSESSRSTSHSNTNSPVTKSDKRIIENIDSSVTPKSETPGSSKGLKILSNIKVEVPVQHHKNMVNTVMDLTGPNDAEYPVERVPSPEKILPDLDDNDNPEILSNECIQPSDLSADSVPSSFAVIKSKSSSKDVNKSIVESKVESEFSDSCPVPDLICNEKPSISPCSELSENGDNSTDHTSISPKPVSSQVSHNTVDPPEKKIQLPQKPYRHNTLRLNNIYVKKHKKVLQIKNAKGFPASSTSKKQEPIASSSNVKAPENFTMNKLHQTDKSECKEKSSVLQTISVEEIKENDDNNEFDADTEEQSMDIEPVAPSSINHQSGFSTTAEIVQVKEEINTSNEGGFSNHTVTSDRDLAPLESLRPINVVPYANMSGDFEEDSNDRELLDLETASKNKQFVSMMNENYFGDNIYADYFTPDRVETFDAEREAAGFKDAPKDGMYNIWGEPSQKENENEFVLPNFIHESYKIAESSGIDYSEIGRERQGDGEGDGCERDSKADVLSEGRSESEAPLNICADERMPPRGELSGQESNGDMESPWGGMYTDVPPTEPYDLIARESWVSDGSEVDVSEKRETFEDELQFPKTLGRAYTCALCGVKAHSLKELRAHKTLVHAHAHASHAPPAPAAPPAHKLARAPHTYSRLVTDRKIKKEEKSHDSVTLTSNLLGIDSKEPITSTILQVYDSLEEAKPKIEGLIKQETKRRRKDYVCPTCKVDQGSDAAFNAHLKIHPLECLTCGKCFFRRANLALHMKTHLGIKNYKCDVCEKRFITRQKLMEHHNVHTGRQPVKCTMCDDTFRRYSNMVQHRDRHHLAKRAKVRDFVCECGAVFHSRAKLAWHRETHDGRPKACLYCSDKFVHAASLTRHVRRSHNEYFLSARLRGKAGENVACPVCKQVYLRANLRAHVRTHSGARPHACVVCGKAFSTAWNLKLHRWTHVSRSAKPFRCALCPAAFVRRAELTSHVNAHRQVRPYTCNHCGCQFVRKYNCARHVREHEQAKRFVCGVPECGKSFHRSYYLSEHMKVHSGARPFACQVCGKTSSNKSNHNKHVKIHHAREPVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00281692;
- 90% Identity
- -
- 80% Identity
- -