Pful032363.1
Basic Information
- Insect
- Parascotia fuliginaria
- Gene Symbol
- -
- Assembly
- GCA_963082885.1
- Location
- OY720199.1:6705382-6711362[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0039 0.42 12.2 1.3 1 23 16 38 16 38 0.97 2 13 7.8e-05 0.0084 17.5 2.3 1 23 44 66 44 66 0.98 3 13 0.74 80 5.0 0.5 1 23 130 153 130 153 0.92 4 13 3 3.2e+02 3.1 4.2 1 23 212 235 212 235 0.92 5 13 0.013 1.4 10.6 0.6 3 23 262 283 260 283 0.89 6 13 0.03 3.2 9.4 1.1 2 23 306 328 305 328 0.93 7 13 0.0015 0.16 13.5 0.0 1 23 334 357 334 357 0.94 8 13 7.2e-06 0.00077 20.8 0.8 2 23 363 385 363 385 0.96 9 13 0.00077 0.083 14.4 0.2 2 23 391 413 390 413 0.93 10 13 0.0019 0.2 13.2 2.6 1 23 420 443 420 443 0.96 11 13 0.00062 0.067 14.7 1.4 3 23 451 471 449 471 0.92 12 13 7.1e-06 0.00077 20.8 3.2 1 23 477 499 477 499 0.98 13 13 2.5e-05 0.0027 19.1 0.9 3 23 507 527 505 528 0.95
Sequence Information
- Coding Sequence
- ATGATGATTCGTCATGTGAGACGAGTGCATATCAAGGAGAAGAATTTCACCTGCAACAAATGCGGCGATAAGTTCTTTGAGAAGAAATTGCTGGAGTTGCATCAAATCAGTCATAGTAATATTAAACCTTATGAGTGTAACTTTTGTTTCAAGAAGTTTCCGAGGAAGAACGCTTTGTATAGACATGAGAAGGTACATAAAGAAGGACGTCAACGACATGTTTCAGTGCCAGAATTAACTCGCATTCGGCAGGAATATCGTACGAGCGAAAAACGAACACTGCAGCTTAAAATAGCTGAGGACCACCGAAAAGACCAACTGGCTACCTTACTGACACTGATAATCCAAAGCACTACTATTATGCCGTTCAGATGGCACAAAAGCAAATATATGTGCTACTACTGCCGATCCTTATTCGTAGAAAGCGCGAAGTTAAAAGAGCATACGGATAATGCACATCAAGAGATCGAAATGGAAGGAATTATCATGAGAACCTTGTACAGAAAAGATCCCCAATCGGTGTTCGCCGATGAGAGACAcgaagaaaaacaaagaaaagatGACCTCACAAGACTGATCACTGTCGTTCTAGAAAACTCCAACATTATGCCTTTCCGATGGGCGGCCAACAAATACATGTGCTTTTTCTGCTGCTGTACCTTCGTAGACAGCGCAAAACTCAAAGAACACACTATAGAAGAACACAAAGACGCCAAATTACGACGAGTATTAAGAATGTTATTAGGCAGTAGTCGCATTAAATTGGATATATCAGAAATTATCTGCAAAAGATGTCCGAAAAGATTCCAAAATTTCGATGACTTTTTGAATCATTTATTTGATGCACATGATCTTAAATTCAACAAAGAAATATCTAAATGcatctttacttttaaattatctgATGATGGCATGTCTTGTGATGAATGTGGCCAAGAATTTCGGTTTTTTGGTCCATTATTGAAGCACGCGCATAAGTTCCATAATAAATATGAGACGTTTTTATGCGAAATTTGCGGACAAGGCTTTGTGGCTAAAGCAAATGTTGAAAGTCATATTAAAAACGTGCACAGTTTAAAAGACAGACAGTGCCAGAAGTGCAATAAAGTATTTCGAAGTCCATATGCATTACAAGTGCATCGAGAAAGATCTCATAAAACAGACTCCTTAAAATGTCCGAAGTGTCCCGAAGTTTTTGGCTCCAAATATCTCAAAAAGAGACACTTAGCTTTGGTTCATGATGTTAAAAAGCTGCAATTCCATTGTGAGGAGTGTGATAGGGTTTACACAATGAAAAGTAGGCTAGTACAGCATAAATTGCGTACACATTTAAAACAGAAAACCGTTTGCTGCGAAATTTGTGGCTTCAAAGTTTTTAACAACGATTTATTGAAGCGTCACATGGTCCGACATGACGACTCACGGCCTTTTTCGTGCGAGTATTGCAAGAAGAGCTTTCAAAGGAAGAAAACTTTGGAGGTACATAAGCGTATACATACTAACGATAGGCGATATGGGTGTAAGGAGTGTGGGAGAGCATTCGTTCAGGTCACCAGCTATAAGCTACATATGAGAGTTCATCACAGCGTGAATGAAGGGTCGTCGTGGAATTCTATGAGTTaa
- Protein Sequence
- MMIRHVRRVHIKEKNFTCNKCGDKFFEKKLLELHQISHSNIKPYECNFCFKKFPRKNALYRHEKVHKEGRQRHVSVPELTRIRQEYRTSEKRTLQLKIAEDHRKDQLATLLTLIIQSTTIMPFRWHKSKYMCYYCRSLFVESAKLKEHTDNAHQEIEMEGIIMRTLYRKDPQSVFADERHEEKQRKDDLTRLITVVLENSNIMPFRWAANKYMCFFCCCTFVDSAKLKEHTIEEHKDAKLRRVLRMLLGSSRIKLDISEIICKRCPKRFQNFDDFLNHLFDAHDLKFNKEISKCIFTFKLSDDGMSCDECGQEFRFFGPLLKHAHKFHNKYETFLCEICGQGFVAKANVESHIKNVHSLKDRQCQKCNKVFRSPYALQVHRERSHKTDSLKCPKCPEVFGSKYLKKRHLALVHDVKKLQFHCEECDRVYTMKSRLVQHKLRTHLKQKTVCCEICGFKVFNNDLLKRHMVRHDDSRPFSCEYCKKSFQRKKTLEVHKRIHTNDRRYGCKECGRAFVQVTSYKLHMRVHHSVNEGSSWNSMS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -