Paeg001568.1
Basic Information
- Insect
- Pararge aegeria
- Gene Symbol
- -
- Assembly
- GCA_905163445.1
- Location
- NC:18710045-18736082[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.13 5.1 7.3 4.6 1 21 273 293 273 294 0.94 2 15 0.82 34 4.8 0.7 1 23 311 334 311 334 0.91 3 15 7.9 3.2e+02 1.7 0.1 3 10 349 356 348 361 0.85 4 15 1.9 77 3.6 3.9 2 23 372 395 372 395 0.89 5 15 2.2 88 3.5 0.5 1 23 397 419 397 419 0.77 6 15 0.0033 0.13 12.3 1.3 1 23 944 967 944 967 0.95 7 15 0.069 2.8 8.2 0.2 2 23 973 994 972 994 0.96 8 15 3.4 1.4e+02 2.8 0.2 2 17 1018 1033 1017 1034 0.90 9 15 5.8 2.4e+02 2.1 5.8 2 23 1090 1111 1089 1111 0.92 10 15 0.0011 0.044 13.9 1.5 2 23 1127 1148 1126 1148 0.97 11 15 2.7e-07 1.1e-05 25.2 2.9 1 23 1154 1176 1154 1176 0.99 12 15 0.0001 0.0042 17.1 0.3 2 23 1182 1203 1181 1203 0.96 13 15 4.2e-05 0.0017 18.3 0.8 1 21 1209 1229 1209 1230 0.95 14 15 0.23 9.5 6.5 0.4 1 20 1235 1254 1235 1255 0.94 15 15 3.5e-05 0.0014 18.5 1.8 3 23 1267 1288 1266 1288 0.97
Sequence Information
- Coding Sequence
- ATGGAGGAAAATAGCAAGAGAAGGACCCGAAAGTCGAAATTAGTCCCGAGGGATTGTATGGATTCCGATGATGAAAATATCGCAGTTATGCAGCAAGAAATTGAAGCAGCATTGGCACATATGAAAAATAAGTCCATATTGAAAAAGTTGAGCAGACAGCAATCCTCACCAAAACCATTGCAGTTTTCCGTCAAAGTGGAAATGGAGGAAGTCGATGAGCCACAGGAAActgaacaaaatttaaatataaaaatcgacTCTGTGAAGAGTCTATCAGAACCTACTGCTGTCCCTCGGTCAAGCAAGGAACCTGAAGTACTTTACTTCAGAATATCTGAAGACGTTATAAGAAAAGAATTCGAGAAAGTATCGCGGGAAACCACAAGCGTCGCTGATAAAAGAATAGAGCTGAACGTCAGGAATATTCTTGGCAAAAAAAGGACAAAAGAAGGGACTAGAGTAGCCTACGTAGAGATCAAACTGCAAAATATATTTCGTAGGACGTGGAAAAATTGGTGCAACACATTCCCGACTATACGAGAGACTCCGCTCTTGTACAAATGTTACACATGTAAAAAGGCCTGGTGGCATCTGCATGACTTTCGAGAACACATAATGCAACATGAAAAATTAATGACCATTCTATTGCAGACTATTTCCCATGAATGCCATGTGTTAGCTCACGAGGGCAATTTAATAACACATGCTGGCCTCACAGACCTCAATGATAAAAGATATTCAGTAGACTCGAACTGTTGGAGGTGTGGCAAAGAAATCACAATGCATATAATGTCAAATTTGGATAAATCTACAGAATATAGGTGCAGTGGTTGCAAGGAAAAATTTTATACATGTACTTTATTATGTGACCATGAGAACAGTTGTTCATTGTACAAAAGAGTTACGGGTAAAAACCCACTTAATGAAATACATGCGTGCACTCAATGCTCAGCAAAGCTGACCTCGGAGAAGCTATTGCTCGAACACATGGTACAACGTCACAGTGTGAGGTCTGATCTTCCCGAAGATTGGGTGCTAAAAATCTGCAGCCACTGTGATTACCCCTTTCATTTACAAGCATTACATGACTGTCCCTTAAAGCCTCCAGTGGCATCATGCAAGTTTTGTTTTCAAAAGTTCAATAGCCACACATttcttttaattcatttaaattcaacGCAACATCTCTATCCATGCAAAGTGTGCGGTTTGGTACTAAGGAAACAGTGTATGGAATTGCAGCATTTAATGGAGCACACTGATAAATACACAACATTATACAAATGCATTTATTGCAAGGATGATATATATTTTCCTACTTTGTTCTCCATtaacaaacataaacaaaatgcTCATGTGGGATTTTTCGAAAGCAAAAGTTTAGGGACTTGTTATGATGTGgTAGTAGTTCCGAAGACATTGGCTGCTATTCAACCAGGAATGAAGCATATAGAGAGGGAAAAGGAATTGGAATCTCTCGATATGACTAAAAAAACCTCTGAGCGTGCTTACGGCGGACTTTTGGGCACGTTGgGTAAACCATCTGGTAGCTCAACAAATCATCACACAAATGAATGTGCTGATAAGAACACTAATGAAacgaaaataaagtttttcaaaaaCGTAGGTCGCCCCGCTAAAACATACAAAGTTGAAGAAAAATCAGATTTTAAACaagaaaatgatattatttacataactgATAGTCCACAAGAAGATGAAGATTTAGACGTCAGAATTCTCGATGATTCCAATCAAAGTGTCGTCATTGACATTAGTACGCCTGATGATTATCTagacaatattattaacaaCATCAAAGCAGAGCCTTCAAATTATACCGATGATCACATAAAcgaaagtatacaaaaaaatgtgtCAGACGATATCGACGAACATGAAAACACTACAGAAATATCAAATGGCAACATCAGTGATATCCGACAAACTGAAATTAATCATTTCGATCCCTGTTTAGTGATCAAAGAAGAAAAGCTAGATTACAACGAAACAGATAACGCTCAACAAGAACCAAACGAGATGcctaatataaaaattgaaaatgtcATGAGAATTAAAGAAGAAGATATGGATATAGTCCAGGAAAACGATAAAGTTGTTGACGGTGACTGCAGTATCATAAGTGGCACTAATAAAAAAACGCCAATATCACTAACCGAGATTAATAAATTAAGATCTAAttctaaaattaatttgaaaactaatttaaaaaaactaagagcCAACATTAATAACAAATTGAGAACTAATTTTGATAAATTGAAAGCTAATGATAAGAAAGATAAATCGAATACCAATAAAGATACATTAGCACCCAGAAATAACGAAAAAGGTAAATTGAAAACTGATAATGGTACATTGAGTTCCAGTTTTGATAATATCAATAATGAAGAGGGCAATAAAACTGATGAATTGGACGTTAGAATAAAGGAAGAACCGGATCTCAAGAATTTTTACACTAATTTCGATGTAAATGCAGAAGAATTAGCATACGAGATAAAAGAAGAGAATCTGGATGAATTATTAGAAGATGACATGATAATATTGGATCCTAATAATAGTGTATCTATGAATTATGAAATGGAACCCGGAACTAAAGCGTCGGTGGCGTCTGGTGACGTAGAATCGCAAGGAGTGGAGCCCGAATTGGTTGTATACCATTCAAATCAGAGAAAGCTGTACAAGTGTACAAAGTGCTCGTTCCAAGGCCACCACTTCGCCTTCAAGCTGCATCAGAAGAAAGAGAAGCACGCCCCCAACAAGAAGGCGTGCCTGCGCAAGAGCAAAGGCGACGATTGCAGCGCCCGCTATACGTGCACTAAGTGCAACATCACTTACGTCACCTGGTACAAATATATTGTGCACTTTAGCAAGGTGCATGCCTACAAATCTCAAACATGCCCCAAATGCTTCAGACCCTATATGACCCTGCAGGCGCTCCAGGGACACCTAAATGCACACATCAAGGAGAGCTACGTAAGCGTTTACGTCATAACTACCAAAGACCCAGAACCCGAGCAATTCACGCAACAGTGTAAAATTTGTTCGGAAAAAGTGGCAACTGCCGACCAATTCAAGCACTGGGAGGGGCATTTGGACATTCTGGACGTCACAAAGAAGACTCAGCCGTGGAAGGGTTTCTCGAACTCTATGGAACATAAACACGAATTGAAAATGATGCTCTTGCTCCTACAGGGTATAAACCTGTCACCAGACTCCAACGAGAAGATGTTCAACAAATTGAAGTACTGCCTCAAATGTAAACGGCGATTCGAGCGCAAGAACGAATGCAAGCGTCATTTCATTGAACATCTACTGATAGACGCCTACCAAGAAAGACATAAGCACGGTTTCCTCAAGTGCCAGATATGTTCCGCTAACTTCTACACGAGTGAAAGGTACAAACGTCACATGCGAGAACACGGCAGTCTGCCGTTGTATAAATGCGAACTCTGCGACAAAACTTTCAGCGACTCTAGCAACTTCACAAAGCACAAAAAGGTGCACAACCTCTCCGTGTTGATCTGCGATATATGCAACAAGAAGTTCACCGGGAAACCCTTCCTAGAAAAACATATACTgaTGCATCAGAACGTTGATCCGTTTGTATGTCAggagtgcaataaagtgttctaCACCGAGTCGAGCTACAGGAAACACATAAGCAGAGGAAAGACGCGCTTCAAATGCCCCTCGTGCCACATCTTCTTCGCCACCCTCCGAGAGAAGTGGGACCATATGTGGGAGGTACACAAAGAGAGAAAGTTCCAAGCAGACTGTCCGATTTGCAACAAGTCTTTCCGTAAGCACCAGGATGTCCGTACTCATATGAGAATCGAACACAAGGATAGCCCTTATAAGTATGTTCCCGACAAGACACCACTGACAGACGTAAAGCATAAGGCTATAGAGAACGAGGAGGATCTAGTTGTGGTTTATATAGATGACGAGTGA
- Protein Sequence
- MEENSKRRTRKSKLVPRDCMDSDDENIAVMQQEIEAALAHMKNKSILKKLSRQQSSPKPLQFSVKVEMEEVDEPQETEQNLNIKIDSVKSLSEPTAVPRSSKEPEVLYFRISEDVIRKEFEKVSRETTSVADKRIELNVRNILGKKRTKEGTRVAYVEIKLQNIFRRTWKNWCNTFPTIRETPLLYKCYTCKKAWWHLHDFREHIMQHEKLMTILLQTISHECHVLAHEGNLITHAGLTDLNDKRYSVDSNCWRCGKEITMHIMSNLDKSTEYRCSGCKEKFYTCTLLCDHENSCSLYKRVTGKNPLNEIHACTQCSAKLTSEKLLLEHMVQRHSVRSDLPEDWVLKICSHCDYPFHLQALHDCPLKPPVASCKFCFQKFNSHTFLLIHLNSTQHLYPCKVCGLVLRKQCMELQHLMEHTDKYTTLYKCIYCKDDIYFPTLFSINKHKQNAHVGFFESKSLGTCYDVVVVPKTLAAIQPGMKHIEREKELESLDMTKKTSERAYGGLLGTLGKPSGSSTNHHTNECADKNTNETKIKFFKNVGRPAKTYKVEEKSDFKQENDIIYITDSPQEDEDLDVRILDDSNQSVVIDISTPDDYLDNIINNIKAEPSNYTDDHINESIQKNVSDDIDEHENTTEISNGNISDIRQTEINHFDPCLVIKEEKLDYNETDNAQQEPNEMPNIKIENVMRIKEEDMDIVQENDKVVDGDCSIISGTNKKTPISLTEINKLRSNSKINLKTNLKKLRANINNKLRTNFDKLKANDKKDKSNTNKDTLAPRNNEKGKLKTDNGTLSSSFDNINNEEGNKTDELDVRIKEEPDLKNFYTNFDVNAEELAYEIKEENLDELLEDDMIILDPNNSVSMNYEMEPGTKASVASGDVESQGVEPELVVYHSNQRKLYKCTKCSFQGHHFAFKLHQKKEKHAPNKKACLRKSKGDDCSARYTCTKCNITYVTWYKYIVHFSKVHAYKSQTCPKCFRPYMTLQALQGHLNAHIKESYVSVYVITTKDPEPEQFTQQCKICSEKVATADQFKHWEGHLDILDVTKKTQPWKGFSNSMEHKHELKMMLLLLQGINLSPDSNEKMFNKLKYCLKCKRRFERKNECKRHFIEHLLIDAYQERHKHGFLKCQICSANFYTSERYKRHMREHGSLPLYKCELCDKTFSDSSNFTKHKKVHNLSVLICDICNKKFTGKPFLEKHILMHQNVDPFVCQECNKVFYTESSYRKHISRGKTRFKCPSCHIFFATLREKWDHMWEVHKERKFQADCPICNKSFRKHQDVRTHMRIEHKDSPYKYVPDKTPLTDVKHKAIENEEDLVVVYIDDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -