Basic Information

Insect: Pararge aegeria
Gene Symbol: -
Assembly: GCA_905163445.1
Location: NC:5480887-5499701[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.037 1.5 9.0 1.8 1 23 334 356 334 356 0.98

2 9 0.00098 0.04 14.0 0.1 1 23 363 385 363 385 0.97

3 9 0.06 2.5 8.3 0.5 3 23 419 440 418 440 0.97

4 9 2.1e-05 0.00087 19.2 0.2 1 23 449 471 449 471 0.98

5 9 0.00057 0.023 14.7 2.5 1 23 476 498 476 498 0.98

6 9 0.00099 0.04 14.0 0.5 1 21 505 525 505 530 0.94

7 9 0.00049 0.02 14.9 1.5 1 21 535 555 535 558 0.95

8 9 0.0015 0.06 13.4 0.2 1 23 564 586 564 586 0.91

9 9 8.9e-06 0.00036 20.4 0.6 2 21 596 615 595 616 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.037	1.5	9.0	1.8	1	23	334	356	334	356	0.98
2	9	0.00098	0.04	14.0	0.1	1	23	363	385	363	385	0.97
3	9	0.06	2.5	8.3	0.5	3	23	419	440	418	440	0.97
4	9	2.1e-05	0.00087	19.2	0.2	1	23	449	471	449	471	0.98
5	9	0.00057	0.023	14.7	2.5	1	23	476	498	476	498	0.98
6	9	0.00099	0.04	14.0	0.5	1	21	505	525	505	530	0.94
7	9	0.00049	0.02	14.9	1.5	1	21	535	555	535	558	0.95
8	9	0.0015	0.06	13.4	0.2	1	23	564	586	564	586	0.91
9	9	8.9e-06	0.00036	20.4	0.6	2	21	596	615	595	616	0.95

Sequence Information

Coding Sequence: ATGGCAGATACTTGCTTTATATGCGACGATACAGTAACTGTGGATATAGATGAGCAAACCAGGGTGAAATACAGAGATGTTGTTGGTAAAAATttgaTTCAAGATTGCCAGTTATGCTACTTATGCTGTCATGTATTGAATAAGCTCgcactttttaaatatatatgtctgCAGAAGACCTCGCAATATCCTGGCCTActaagCAAAAAATATTATCcgataaagttacaaaaaagcGACCTCGAAATCCACATCCTATGTCCAGAGAAATGCTATGAATACAATCAAATACATAGCAACAAAAGCTACCAATTCAATCACAGCGATGACTCCAATGATTCTGTCGACACTCGATATGCCAATGACAGtgataatgaaaatttaaatcatcATAACGAAATCGTAtacaatcataatataataaataatgacatTGAATACATAAATAGTGACAGACAAAATATAAACAGTGATAAAATAGTGATATCAGGATGTGACAATTTCTACGATAATATTAAAGAACATAATGCAATAGATGAGTTACATTGTGACGTAAAAAATGATAATagaaatgatgatgaagttatAAAACTAACAGATATTGATACGGTTTTAAACGCAGATTTAAATGGTCAATCTATAGATTATAATATAGGAAATTATGATAAAATgaatgatttaaataatcaGGACAATAGAATAACAGGAACATCATTTACCGGTGTATCACCGGTAAATGATGATCATACAAACTTGTACGATGTTAAAATTGAAATCGATAACGAGAACTATTCAGGAGCAAATAAAAATGACaattttgaaaaagaaatagTGTTTAATGCTGAATCAAAAATGGAAGAAACCGCAGACGATAGCAAGGTTGTAAAGAAGAGCAAGAAGAAGTCGGATCGAGGTTTCAAGAGGATAATTTTGAATCTAGACAAGCAGAAGATTGAGTTAGAAGCGAATAGAAAGAAGAAGAGTTATATAGAAGCTGAATTTAAGTGTTACAATTGTGCACTGAGTTTCCTTTTCAAAGATACGTATCAAGCTCATATGATGAGACATGAAGAAtccAACGGTGAATATCAATGTGTTACATGCACGTTACGTTTCGCGACACCCGCCTTGCTGAGGATCCACGCGGCTAGTCACACCGAGCGATACTTGTGTCGCAAGTGTGGTGAGTGCCTGAGGCCGCGGGTCAAGAGACGCCACGCATGTCAGCAGCCAAGAGAGCCGCAGAGCGTCGCTTGCCATTTGTGCGGGAACTTGCTCAAAGACGCAAACGGTCTCCAGCAGCATTTGAAGAGGGTGCACGCAAACAAAAGCAGCGGCCGAAGATACGCGTGTAACGTTTGCGGGGACAGCTACACGCGTCAAGGTGCCTTGAGAACGCATATGATAAAACACATAAACCGCAAATTCCACTGCGACCAGTGTCCAGGTACCTACAGCAGTCCGTACACATTGACGCAGCACAAGAAAACCCACGACGCCGGCGGTGTGACGCACTACTGTGACACGTGCGGGGCGGGCTACGCCTCCAGAAAAAGTTTACTGGCCCATATGAGAAACACAAGCAACCATTCTACAACGACATACGAATGCCCCATTTGCAGTCGCGTTTGCCCCAACCAGAAGTCCCTCGCATCCCACATCCAGTGTGTCCACTCAACACGCAAGGACTTCACATGTTCGCTTTGCCCCGCTCGCTACAGCAACCGGAAGTCGCTCGTGCGACACGCAGTCGCGCATACTACACAGAAACCGGCCAGAATTGTGGTTTGTCACTTGTGCGGGACCAATTTCAAGgaTAATAGCAAGCTGAATAGACATCTTCGGGAAGTATGCAAGAAGTCGAAAGAAGAACAGCTTTTAGCTATGTACgattaa
Protein Sequence: MADTCFICDDTVTVDIDEQTRVKYRDVVGKNLIQDCQLCYLCCHVLNKLALFKYICLQKTSQYPGLLSKKYYPIKLQKSDLEIHILCPEKCYEYNQIHSNKSYQFNHSDDSNDSVDTRYANDSDNENLNHHNEIVYNHNIINNDIEYINSDRQNINSDKIVISGCDNFYDNIKEHNAIDELHCDVKNDNRNDDEVIKLTDIDTVLNADLNGQSIDYNIGNYDKMNDLNNQDNRITGTSFTGVSPVNDDHTNLYDVKIEIDNENYSGANKNDNFEKEIVFNAESKMEETADDSKVVKKSKKKSDRGFKRIILNLDKQKIELEANRKKKSYIEAEFKCYNCALSFLFKDTYQAHMMRHEESNGEYQCVTCTLRFATPALLRIHAASHTERYLCRKCGECLRPRVKRRHACQQPREPQSVACHLCGNLLKDANGLQQHLKRVHANKSSGRRYACNVCGDSYTRQGALRTHMIKHINRKFHCDQCPGTYSSPYTLTQHKKTHDAGGVTHYCDTCGAGYASRKSLLAHMRNTSNHSTTTYECPICSRVCPNQKSLASHIQCVHSTRKDFTCSLCPARYSNRKSLVRHAVAHTTQKPARIVVCHLCGTNFKDNSKLNRHLREVCKKSKEEQLLAMYD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -