Paeg002331.1
Basic Information
- Insect
- Pararge aegeria
- Gene Symbol
- -
- Assembly
- GCA_905163445.1
- Location
- NC:1815067-1838345[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00029 0.012 15.7 3.0 1 23 396 418 396 418 0.98 2 11 0.072 3 8.1 0.9 1 23 425 448 425 448 0.90 3 11 0.015 0.61 10.3 0.3 1 23 452 474 452 474 0.98 4 11 0.0002 0.0082 16.1 1.7 1 23 479 502 479 502 0.98 5 11 0.00022 0.0092 16.0 0.3 1 23 506 529 506 529 0.97 6 11 0.0098 0.4 10.8 0.5 2 22 541 561 541 565 0.93 7 11 0.8 33 4.8 0.5 3 23 608 629 606 629 0.95 8 11 0.048 2 8.7 1.4 2 20 643 661 642 664 0.91 9 11 3.9e-06 0.00016 21.5 0.3 1 23 670 692 670 692 0.96 10 11 8e-06 0.00033 20.6 1.4 1 23 699 721 699 721 0.96 11 11 0.0042 0.17 12.0 0.5 1 20 726 745 726 749 0.79
Sequence Information
- Coding Sequence
- ATGCGGTGTTGTCTGTCTTTCTGTGAGAATTCTAGTGAGAAACTTCTCTCGAAACCTAACTCTAAATCTTTGGATGTTACCTTTCATGgATTCCCTACAACACAGTGGCTTAGGCACTCTTGGCTGGTGTCGTTAGGAATGGAAGAAATCCACTTGCCAGGTGCACCAGTGATATGCTCACAACATTTTCGAAACGATGATTTTCAAACTGGGACATGTATACTCAAAAGTAATGCGGTTCCAACAGCTACACAgGTCTGCGTGACTTGCCTGGACACCACAAGTAAACTGTATCCAATATCCAAGTATCACTTAGCAGAAGCTTATAACAATGTGACTGGACTTTCGtttcacAACATGTTGAGGTTTTCACCAATGATCTGTATGGAATGTTCAAAGAGATTGGCTAACTGTAATCAGTTCAGAAACAAGAGTTTGCGGGCACATCACTTACTGTTACAATTCCTTGATGGCAATGATTCGTTAActacacaaaatataaaaacaatcaaTAGAGtggataataaattaacatctaATATTACCAAGAAAACATTTGAACCCGACCATTGCgactttcatttcattcatgACGAGgaaaaaaatgaagaaattctaGGAATAGAAAATGTAGAGGTAACCATAGACAAGACTGAAGTCAAAATCGAAAATGAAGCGAAAGAGGAAAGTTCGAACGGTTTCGACAGCGACGTAGACTTTAATAACGACGGCATAGACATTGTAGTCGAGCGTCTGACAGACACAGATAATCACAAAAATGTGGAAGTCATTAAAATAGACAGAGACAACATAGAGGATTTTATCAACAATGACGTATTTACGGATGTTGAATTCCCGAACGATGATAATGCtggtgattatgatgataatgatgatatagattttaatgatgatgatgacgttatACTAtctagtattattaaaaaaacaaagaatggaaaagttgttaaaaaaaataaagtcagtAAAGAAGTTGATGcaaaaaatgttacaattaaGAAAGATGGAAAGAAGCGTGTAAAGTCTGAGATAAGAGGACGTCCGGGAAGAAAACCAGGTTTCAAAGAAGAACTAAAGCTGTTCAAAGTTACGGAATTAACTCACGAGGAGCAACTGGCGGAAATACAGAAAAGGAAGGACACATCCAACTTCAAAAATTCGCCTTACAAGTGTACTATTTGTTACAAGGGTTTCTGTGATATCAACGCCTACAACAGACACATGGACAAACATACTAACAAATTCGGACAATTTGCATGTCCGATATGCGGCCTGCATACGAAAAATACGTACAGAGTAAATAAACATCTTGGCAACACGCACGCTGCCCGATACAGCTGTACCGTGTGTCCATTTGTTACGAgaagtagaaattCTGCAAAAGCCCACGAACGATGGCACGACGGCAAGAAGTACAAATGTCCTCACTGCGAAGAGGAATTCATTAAAAGCACGTCGTACATGTCGCACGTGCGTATAAAGCACCCTTCGGACTTCGTGTGCACGCTATGCGGTTTCTCATTCATCGGCGAGAGGGGACTTCGTATGCATATGAACATGAAGCATCGCTTCGACAACGTACAGAACCAAGATGGCCCTTCCTGCGAGGAGTGCAACATCCGCTTCGCTTCAGAGACGGCGTATCATCAGCATATGAAGGTGTCGCCCAAACACGCCACCGCCGAcacgtTTAAACTGAACTACCCTGTAAGGAAGATCTGCCGTCGCAACCAGCCCAGACCTACAAAGCCTGGAAAACGGGAGGCCGTTTCCGCTCCCAAGACAATAGGCCCGATGGATTGTGAGCAGtgcggTATCAAACTCAAAGGTTCCAGGAGTTACGCGATGCACTTCAAGAAATACCATCCGGACAAAAACCGTACTAAATTCCCCAAAGCGAGGATTATGTGCGAGCAGTGCGGAAAGATATTCACGTGCATGGCACACCTTCGTTATCACATGCCGATCCACGCGGAGCAGAAGCAGTTCAAATGCGACATCTGCGACAAGAGGTTCGCGTTCAAGGCCAACCTGATGAACCACGTGGTGATACACGACGAGTCCCGGCCCAGATTCGAGTGTACTGTGTGCGGGAAGAACTTCTCCAATCAGCAGAATAGGTGGAGACATATGTTTCTACACAAAGGCATCAAATTCAAGTGCGAGATATGTGACAAGAGCTTCAACACTGACCCCCAGAGGGCCCTGCACGTGGCCCACGTGCACATGAAGGTGCCCTGGCCGAAGCGACACCGCGGCCCCCGGCCCAAGACGCACCGCGCGAGACACGCTATGTACACCAGCGACTCTCAAGACTCGTGA
- Protein Sequence
- MRCCLSFCENSSEKLLSKPNSKSLDVTFHGFPTTQWLRHSWLVSLGMEEIHLPGAPVICSQHFRNDDFQTGTCILKSNAVPTATQVCVTCLDTTSKLYPISKYHLAEAYNNVTGLSFHNMLRFSPMICMECSKRLANCNQFRNKSLRAHHLLLQFLDGNDSLTTQNIKTINRVDNKLTSNITKKTFEPDHCDFHFIHDEEKNEEILGIENVEVTIDKTEVKIENEAKEESSNGFDSDVDFNNDGIDIVVERLTDTDNHKNVEVIKIDRDNIEDFINNDVFTDVEFPNDDNAGDYDDNDDIDFNDDDDVILSSIIKKTKNGKVVKKNKVSKEVDAKNVTIKKDGKKRVKSEIRGRPGRKPGFKEELKLFKVTELTHEEQLAEIQKRKDTSNFKNSPYKCTICYKGFCDINAYNRHMDKHTNKFGQFACPICGLHTKNTYRVNKHLGNTHAARYSCTVCPFVTRSRNSAKAHERWHDGKKYKCPHCEEEFIKSTSYMSHVRIKHPSDFVCTLCGFSFIGERGLRMHMNMKHRFDNVQNQDGPSCEECNIRFASETAYHQHMKVSPKHATADTFKLNYPVRKICRRNQPRPTKPGKREAVSAPKTIGPMDCEQCGIKLKGSRSYAMHFKKYHPDKNRTKFPKARIMCEQCGKIFTCMAHLRYHMPIHAEQKQFKCDICDKRFAFKANLMNHVVIHDESRPRFECTVCGKNFSNQQNRWRHMFLHKGIKFKCEICDKSFNTDPQRALHVAHVHMKVPWPKRHRGPRPKTHRARHAMYTSDSQDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -