Basic Information

Insect: Pararge aegeria
Gene Symbol: -
Assembly: GCA_905163445.1
Location: NC:1962269-2017473[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0023 0.095 12.8 3.7 1 23 287 309 287 309 0.98

2 11 9.2e-05 0.0038 17.2 1.5 2 23 317 339 317 339 0.95

3 11 0.46 19 5.6 0.9 1 23 343 365 343 365 0.96

4 11 0.00092 0.038 14.1 4.0 1 23 370 393 370 393 0.98

5 11 0.0006 0.024 14.7 1.1 2 23 398 420 397 421 0.93

6 11 2.3 94 3.4 0.0 3 21 433 451 432 456 0.91

7 11 1.4 58 4.0 1.3 2 23 482 504 481 504 0.94

8 11 0.0011 0.045 13.8 1.1 3 23 522 543 521 543 0.97

9 11 2.7e-07 1.1e-05 25.2 2.5 1 23 550 572 550 572 0.99

10 11 2.2e-07 9.2e-06 25.4 0.9 3 23 581 601 579 601 0.98

11 11 0.0046 0.19 11.9 3.7 1 23 607 630 607 630 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0023	0.095	12.8	3.7	1	23	287	309	287	309	0.98
2	11	9.2e-05	0.0038	17.2	1.5	2	23	317	339	317	339	0.95
3	11	0.46	19	5.6	0.9	1	23	343	365	343	365	0.96
4	11	0.00092	0.038	14.1	4.0	1	23	370	393	370	393	0.98
5	11	0.0006	0.024	14.7	1.1	2	23	398	420	397	421	0.93
6	11	2.3	94	3.4	0.0	3	21	433	451	432	456	0.91
7	11	1.4	58	4.0	1.3	2	23	482	504	481	504	0.94
8	11	0.0011	0.045	13.8	1.1	3	23	522	543	521	543	0.97
9	11	2.7e-07	1.1e-05	25.2	2.5	1	23	550	572	550	572	0.99
10	11	2.2e-07	9.2e-06	25.4	0.9	3	23	581	601	579	601	0.98
11	11	0.0046	0.19	11.9	3.7	1	23	607	630	607	630	0.93

Sequence Information

Coding Sequence: ATGGATTTAAAACGTACTTTACCGTCACTAGCACAGTTCTGCCTGTGTTGTCTGAACACTGACTGTACACTGTACCCAGAGGACAAATATAACTTGGGTGAGgcttataaaaacttaataggAAAATcaCTTCAATATAAGATGCCCTATGACAAACAATTTTGCACAGAATGTGCGCAGAGATTGATTAACTGTAATAAGTTCAGAGAAAAGAGTTTGAGAGCTTATAACTTATTATCCATATTATCAAGTAAGCATGATTTGTTAACAACACAAAACGTAAGGAGAATTAATAGATCAAAAAATTATCTAACTTCTAATATAACAAAGAAGATGTTTGAACCAGATCACTGTGACTATTCTTACCTTGTGCAAGACCGACCACTTCAAGTTAAAATGGAACTAAAAACCAAAGAAGATAATGGAGACATCGAAATAATAATTGAACCCAAAAAAGAACTCGCCGACATAAAAAGTGATGACGAATTTCTGAACGATGATATAGACAACGATACAGAGTTCCTATACAGTGACAATAAATTAGCGAATGAGGAGGGAATCAAAAACAACTTGTTCAACGACCGCTGCGAGACTGATGAATTCTGCGGTGGCGATTCGAATGCCGATAGTGACATGGAACTTGTCTGTATTGGTGATGTACAGGATATTGATGCACCGAAAAGGAAACGCAAGGATACACCTAAAAATGACGCAGGACACAATTACGATACATTTAACACAGTTGTTAACACCGTTCAGGAGGATCTAAAGGCGTTTAGGATTACAAAGTTGAATCACAAAGAGCAGTTAGCAGATATACAGAGGCGAAAGAAATCGGATAATTACAAAAACTCTCCACACAAATGCAGAGTATGTTATAAGGGATTTGGTACCATGTCCACTTACGAATCTCACATGAAGAGACATAGCGACATATTTGGACCGGCCGAATGTCCTATATGCAAGATGTACTTCAAAACGGAAAGTTTATtgcgtcatcatatcaaccaaagTCACAGCATGAGATTCAGTTGCAAGAGCTGTCCATTGGTGACCAACCACAAGAATTCAGCAGTGAACCACGGACGCTGGCATAAAGGTCTCAAATTCAAATGCCAGCATTGTGATGAGGAGTACAGTAAAAAGACTACATATTTATCCCACCTACGCATAAGGCACCCGTCTGACGTAGTTTGCACGATGTGCGGGTTCTCGTTCATCACTGAGAAGGGTCTAAAGATGCACATCAACTTCAAGCATCACTTCGACTACGTGGAGAAGCCAGACGGTCCCGCATGTGAGGCGTGCAACGTACGCTTCGCTACCGACGTCGCTTATAAAGCTCACTTGAGCGTTTCACCGAAACATACATACCCCGTCAAGAGAAACGAACCCGTCGTAAAAAGAACTGGACGCAGCGCCATTTGCAAAACACAGCTCGTCGAATGTGAACAGtgcggtACTAAACTAAAAGGCTTCAAGTTGtataattatcattttaagAGATTCCATCCGGAAAAGAATCAGACTCAGTTCCCGCCGCAATTTCCGAAGCCTTTACTGTGCGAGTTGTGCGGCAAATCTTTTAAGATGGCTTGCTTCCTGCGAGACCACGTGCTGACAGCTCACGCCGCCAGCAAGCCGGAGTACCAGTGCAACAAGTGTAATAAGAAGTACTCCCAAAGATCTAACCTAATAGTTCACCTCAAGAGTCACACGGGGGCGCAGCCAAGTTTTGGATGCCCCACATGTGGGAAGAAGTTCTCGAACAAGGCGAATATGAAGAGACATATATTGaCCCACAAAGTTCTGAAGCCGTTTAAATGTCACGCATGCGATAAGACATTCGTTAACGCCTCGGAGAGGAGGTATCACGTGTTGCACTCTCATCTGAAGAAGCCGTGGCCGAAAAAGAACCGTGGCCCCAGGGTGCGAGCGAGTCGATCCCGTAACACTACAGAGGCAGTTTGTGGCATCGCAATACCTGAGAACAGGGCGACTAGCAAAGGTGACGATTCTCAAGAATGA
Protein Sequence: MDLKRTLPSLAQFCLCCLNTDCTLYPEDKYNLGEAYKNLIGKSLQYKMPYDKQFCTECAQRLINCNKFREKSLRAYNLLSILSSKHDLLTTQNVRRINRSKNYLTSNITKKMFEPDHCDYSYLVQDRPLQVKMELKTKEDNGDIEIIIEPKKELADIKSDDEFLNDDIDNDTEFLYSDNKLANEEGIKNNLFNDRCETDEFCGGDSNADSDMELVCIGDVQDIDAPKRKRKDTPKNDAGHNYDTFNTVVNTVQEDLKAFRITKLNHKEQLADIQRRKKSDNYKNSPHKCRVCYKGFGTMSTYESHMKRHSDIFGPAECPICKMYFKTESLLRHHINQSHSMRFSCKSCPLVTNHKNSAVNHGRWHKGLKFKCQHCDEEYSKKTTYLSHLRIRHPSDVVCTMCGFSFITEKGLKMHINFKHHFDYVEKPDGPACEACNVRFATDVAYKAHLSVSPKHTYPVKRNEPVVKRTGRSAICKTQLVECEQCGTKLKGFKLYNYHFKRFHPEKNQTQFPPQFPKPLLCELCGKSFKMACFLRDHVLTAHAASKPEYQCNKCNKKYSQRSNLIVHLKSHTGAQPSFGCPTCGKKFSNKANMKRHILTHKVLKPFKCHACDKTFVNASERRYHVLHSHLKKPWPKKNRGPRVRASRSRNTTEAVCGIAIPENRATSKGDDSQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -