Paeg002669.1
Basic Information
- Insect
- Pararge aegeria
- Gene Symbol
- -
- Assembly
- GCA_905163445.1
- Location
- NC:6643582-6646845[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00055 0.023 14.8 2.1 1 23 171 194 171 194 0.97 2 10 7.8 3.2e+02 1.7 0.7 2 12 222 232 221 245 0.75 3 10 0.034 1.4 9.1 0.7 2 23 268 289 267 289 0.97 4 10 0.00024 0.0099 15.9 0.4 1 23 293 315 293 315 0.97 5 10 0.00071 0.029 14.4 0.4 1 23 320 343 320 343 0.94 6 10 0.02 0.81 9.9 1.7 1 23 350 373 350 373 0.96 7 10 0.00034 0.014 15.4 0.9 2 23 381 403 380 403 0.93 8 10 1.3e-05 0.00054 19.9 1.5 1 23 409 431 409 431 0.98 9 10 0.00023 0.0094 16.0 0.8 1 23 437 459 437 459 0.99 10 10 2.6e-05 0.0011 18.9 1.3 1 23 465 488 465 488 0.98
Sequence Information
- Coding Sequence
- ATGAGCGGAGATATAAAGAAGATTCCTATTTACGGTGATGTGAAGAAAATGATTATgcgtaaagataataaaaacgcTATAGTCCAAATACCTAACGCAACAGTCAAAAGGCTTTCTGTAAAGATTAAAAGACCCGCGCCAGTACCTGATATTGTAACTGCTATATCTAAAATGCCTAACATAACCATAATGAAGGGTTTATCAGGAACTATCAAAAGAATGCCCACAAAAAATAGAACTGCAATGGTCACAATACCAagaaataaaactgccataactGCATTACCAAATGTCACTGTCGTAAAAGGATTATCTGATTGTATTAGTAGAACCGCTCCAAACACAATAGTAAAAAcagttttagttaaaaaaacgcCTAAAAAAATACCGAATAAAAAGGGTGAGAAGGGGGACCCTCCGATTTCTGAAAAACACAAGCATTGTACgaatttagaagttattttgGGGAGTTCGAACGCAACGCCGATTCGTAGCCAAGATGGATTCGCATATACGTGTTGCTTCTGTAACGAGAGCTATGTAAAGCCAGCCGATCTAAAAACTCATACAATGATGACACATAACAACAGTTCCGATGTAAGTGAGTTCATGAAGAAACAACGACCCTCTGCTTTCTTACTGAAGCTCGATATTACACTATTAAAATGCACACTATGTGACGAAAGTACCATAGACACGGTAGAAGGATTGTTCAACCATTTGCAAGAAGAACACAAAAAGATTCTATTTACGGATGTAAAGAATCATATAATTCCCTTTAGATTTGGAGGAGATCAACTGCAATGTGCTATTTGTCCGAATGTATTCACCAAATACAAAATCCTTTTAGAGCACATGCATACGCATTACAGAAACTACGTCTGTGATATTTGTAATTATGGTTTCAGTACTCGCAGGGCGATGTTAAATCACAAAGAATCACATAAAACAGGCACCTACGAATGCAGTCAGTGCGACAAAGTATTTGAGAACCCCCAAAGGAGAAGAACGCATCTTAACGCAGTCCACAAATTTATGAACATGCCCCACAGATGCGGTGTCTGCAATGAGAGATTTAAAAGCATCCGCCTGAAGGATCGACACATGATCAAAGTGCACGGAAAGACGCCGATGTCTTTAACATGCTTAGCCTGTGACAAAATCTTCACAAGCCAAAATTCCTTACGGATACACAGAAAAAATTATCACCTGATGGAAAGGCATTACCAATGCAAGGAGTGCGAAATGAACTTCTTCACCAACGGCCAGTTGAAGAACCACATGGTGAAGCACACGGGCAGGAAGGATTTCCAATGCGACGTTTGCTTGAAGTGGTTCACAAGGAAAACAGTTTTGCGCGAGCATATGCGGATTCATGCAAACGATCGTCGTTTCACCTGTTTGGAGTGCGGAAGGGGATTCGTTCAGAAATGCAGTTGGCGTGGTCACATGCGTACGGTGCATGGTTTGAAAGCTGATAAGGCATTGTCTACGACGTAA
- Protein Sequence
- MSGDIKKIPIYGDVKKMIMRKDNKNAIVQIPNATVKRLSVKIKRPAPVPDIVTAISKMPNITIMKGLSGTIKRMPTKNRTAMVTIPRNKTAITALPNVTVVKGLSDCISRTAPNTIVKTVLVKKTPKKIPNKKGEKGDPPISEKHKHCTNLEVILGSSNATPIRSQDGFAYTCCFCNESYVKPADLKTHTMMTHNNSSDVSEFMKKQRPSAFLLKLDITLLKCTLCDESTIDTVEGLFNHLQEEHKKILFTDVKNHIIPFRFGGDQLQCAICPNVFTKYKILLEHMHTHYRNYVCDICNYGFSTRRAMLNHKESHKTGTYECSQCDKVFENPQRRRTHLNAVHKFMNMPHRCGVCNERFKSIRLKDRHMIKVHGKTPMSLTCLACDKIFTSQNSLRIHRKNYHLMERHYQCKECEMNFFTNGQLKNHMVKHTGRKDFQCDVCLKWFTRKTVLREHMRIHANDRRFTCLECGRGFVQKCSWRGHMRTVHGLKADKALSTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -