Paeg002348.1
Basic Information
- Insect
- Pararge aegeria
- Gene Symbol
- -
- Assembly
- GCA_905163445.1
- Location
- NC:3989789-4021773[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.032 1.3 9.2 0.0 2 23 258 279 257 279 0.96 2 12 0.12 4.8 7.4 2.5 2 23 285 307 284 307 0.91 3 12 0.52 21 5.4 0.3 1 19 311 329 311 334 0.87 4 12 1.4e-05 0.00057 19.8 0.9 2 23 338 360 337 360 0.96 5 12 0.012 0.48 10.6 2.2 2 23 364 386 363 386 0.96 6 12 0.0071 0.29 11.3 0.5 2 22 400 420 399 424 0.93 7 12 0.00031 0.013 15.5 0.8 3 23 439 460 438 460 0.95 8 12 0.018 0.76 10.0 0.1 3 21 477 495 476 500 0.93 9 12 7e-06 0.00029 20.7 0.2 2 23 509 531 508 531 0.94 10 12 0.11 4.6 7.5 3.5 1 23 537 560 537 560 0.92 11 12 0.00035 0.014 15.4 1.3 3 23 571 591 570 591 0.98 12 12 0.0037 0.15 12.2 1.1 1 23 597 620 597 620 0.97
Sequence Information
- Coding Sequence
- ATGAACGCCGTAAAAAGTGAATTGGACAATGTATGCCGCGGTTGTTTATGCGTCGATCGCATACTGATGCCGCTAAACAAGaatgttgatttattttttatactactgGGCAACGAACTTTCTATATCCGagGATTCCAAATACTACAATATTCTCCTGTGCTGGGAATGCATCGCACTATTGAAGAAGGCTGAAGTTTTCCGCAAGAGAGTGCAGTCGGCTCACAGATATTTCGAGAGAATATTGAGCAGTCCAATCACGATACGGGCCTTAACAAATCTCAATACTCACAAGAAGGACGACTACGACTTAATATATGTGGAAAATGAGAATTTCGAACCCAAAATAAAACCTGAagcattaaaatttgaaattccgATACCCATATCGAATGAACCTGATAACAGCTGTCATATTAAAGAGGAAAACTACGATGAagacgatgatgacgacgacAATAACTTTGATTACGATGCGGAGGAGGCGAAACCCGATGTGTCTTCCTTCGTGAAGAaggagaagaaaaaaaagaaatacaaaatcagcCCTTTGGGTAAAAGAATAAAGACAAAATCCATCAAGTACACAGAggaggaaataaataaatacatagaacAAGTCGACTACAGTCTGAAGGATGTGTTAGCGATGAGGCACGAAAAGAAACCCAATCGGATTAAGAACATGGAAACTCGTTGCAATGTTTACATAATGAAACTGCTGGAGACGCAGAAGAAAGATCTGAGTAAAAGACTGAAGGGCGACGGCATAACGTGCTCGGAGTGTGATGCTGTAGTGCCGGACCAGGAGTCCATGAAGATGCACTGGGAGAGCCACCCGGTTTCTCTTCTCCGCTGCCACTTCTGTGGCCTTCTCAGCAAGTCGCGCAAGAACCTCACCTACCACACTGAGGCGCGGCACTCCATCATATACAGCTGTACGCTGTGCAATATCGAGTTCAGAGCCCTGCCGGAGTACTACCGCCACGACCGGGAGCTTCACAGGACACTAATATGCGACTACTGCGGCAAGAAGTTCCAACAGAAAAGCGGCATCGAACGGCATATCAAACGTAAGCACTTACCAATGAAATGCGAGGTATGTAAGcggaattacaaaaaaatggcTTTTCTGAACAACCACATGGCCGTTTGCCACCCGGAGGTGAAGTGGAAAACGGTCAAGCGCGAGTTGACATACTGCGTCGAATGCGACATGCATTTCGGTACGGAGTTCCTATATAAACGTCACCTGAGAACCGCCATTGCCCACCGACCTAAACCCAAAATCACacaCAACCATTTACCCGCGATGTGCTATATTTGTAACTTTGAGTTCAAACGAAAGAACTACCTGGCTGAGCACATGAAGCTATTGCACCCGGAGCATAAAGAGGTTAAGAGGAAAATAGTCAAAGAGCTAGCCTACTGTGTCGAGTGCGACCTGCAGTTCGCGAGCGAGTACTTTTACAGGCGGCACCTGAGATACGCGGTCGCGCACAAGCGCAGGATAAGAGCTAAGGTACCTTGCCCGGACTGTGGTAAGATATTCAGTCGGAAGAGCTATATGGATAATCACTATAAACTAATACACGTTAGAAAGAGTCAGCACTATTGTGAGCTCTGTGATAAGcACTTCATAAACGGCTACGCGATACGAACACACAAGAAATTCGTCCACGAGAAATACGAGAAGCCGAAGAACAAGATATGTGATATCTGCGGAAGAGGTTTCCATACAAATCGCGTGCTGATTAATCACAAAAGGACACATACGGGTGAGAGGCCGCATAAGTGCTCTTACTGTCCCGCGGCCTTCGCGCAGAACGTCGCGCGGAAGACGCACGAGAAAACACAACATAAACACCTACTGCAAGAGCTCAAGGGCTTCTCGGCGTGA
- Protein Sequence
- MNAVKSELDNVCRGCLCVDRILMPLNKNVDLFFILLGNELSISEDSKYYNILLCWECIALLKKAEVFRKRVQSAHRYFERILSSPITIRALTNLNTHKKDDYDLIYVENENFEPKIKPEALKFEIPIPISNEPDNSCHIKEENYDEDDDDDDNNFDYDAEEAKPDVSSFVKKEKKKKKYKISPLGKRIKTKSIKYTEEEINKYIEQVDYSLKDVLAMRHEKKPNRIKNMETRCNVYIMKLLETQKKDLSKRLKGDGITCSECDAVVPDQESMKMHWESHPVSLLRCHFCGLLSKSRKNLTYHTEARHSIIYSCTLCNIEFRALPEYYRHDRELHRTLICDYCGKKFQQKSGIERHIKRKHLPMKCEVCKRNYKKMAFLNNHMAVCHPEVKWKTVKRELTYCVECDMHFGTEFLYKRHLRTAIAHRPKPKITHNHLPAMCYICNFEFKRKNYLAEHMKLLHPEHKEVKRKIVKELAYCVECDLQFASEYFYRRHLRYAVAHKRRIRAKVPCPDCGKIFSRKSYMDNHYKLIHVRKSQHYCELCDKHFINGYAIRTHKKFVHEKYEKPKNKICDICGRGFHTNRVLINHKRTHTGERPHKCSYCPAAFAQNVARKTHEKTQHKHLLQELKGFSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -