Paeg002562.1
Basic Information
- Insect
- Pararge aegeria
- Gene Symbol
- CG12744
- Assembly
- GCA_905163445.1
- Location
- NC:7023884-7034702[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 3.9 1.6e+02 2.7 0.1 2 23 106 127 105 127 0.94 2 22 0.0035 0.14 12.2 1.3 2 23 150 171 149 171 0.97 3 22 0.0016 0.066 13.3 1.4 2 23 176 197 175 197 0.94 4 22 0.0077 0.32 11.2 0.9 1 23 202 225 202 225 0.91 5 22 0.032 1.3 9.2 3.5 1 23 232 255 232 255 0.95 6 22 0.002 0.08 13.0 1.3 2 23 263 285 262 285 0.97 7 22 0.0086 0.35 11.0 0.5 1 23 291 313 291 313 0.96 8 22 9.5e-06 0.00039 20.3 0.8 1 23 319 341 319 341 0.99 9 22 1 42 4.5 1.1 3 23 404 425 402 425 0.94 10 22 0.16 6.5 7.0 1.2 2 23 451 472 450 472 0.97 11 22 1.1 43 4.4 2.3 2 23 495 516 494 516 0.96 12 22 0.026 1.1 9.5 0.2 1 23 520 542 520 542 0.97 13 22 0.64 26 5.1 1.3 1 22 547 568 547 570 0.86 14 22 0.00032 0.013 15.5 3.8 2 23 577 599 576 599 0.95 15 22 0.00018 0.0073 16.3 1.8 2 23 607 629 606 629 0.97 16 22 0.0011 0.043 13.9 1.9 1 23 635 657 635 657 0.98 17 22 0.48 20 5.5 1.0 3 23 709 730 707 730 0.93 18 22 2.8 1.1e+02 3.1 0.2 2 23 756 781 755 781 0.90 19 22 4 1.6e+02 2.6 3.3 2 23 804 827 803 827 0.90 20 22 0.03 1.2 9.3 0.1 1 23 831 853 831 853 0.97 21 22 0.0054 0.22 11.7 0.9 3 23 886 907 885 907 0.95 22 22 0.00046 0.019 15.0 2.5 3 23 916 937 914 937 0.96
Sequence Information
- Coding Sequence
- atggagggtagaggaataaaaaaagaagagaCAGAGGCAAAGAGAGCGAAAAGAAGTTCACCAAATAAGGTTAAACAAGAGGAAATGAGAAAGCACGGCGACAACATATACACAATGTTCACTTACACGAACGCAACCCCAATACGGTGTAAGAACGACTTTGGTTACGCTTGCTGTTTTTGCACAGATGTATATCAAGAACCTAGCCAGCTCAAAGAACACACGATAGAATGCCATGGTACTGAAATGAAGACTAGATTCATGGATGGCAAACGTCTGGGCGATTATTTGGTCAAACTAGATATAACGAAACTCAGATGTAGCATATGCGTAGCGGAACTAAAAACTTTGGACGAAGCTTTAACACATCTGAAAGAGCACGACAAACCGATGCATTTAGATATAAACAACCACTTAATGCCATTTAACTTCGAAGGCGGCGATCTGACATGTGCGTACTGTAACGTAATGTTTAACAAATTCAAGAAACTACTCGAGCACATGAACCGACATTACAGAAATTGCGTCTGTGATATTTGCGGCGCCGGTTTCATCAACCGCAGCACTTTTACTGTGCACTATCACGGTCACAGCAAGGGTTACTTCCCTTGTCAGCAGTGCCAGAAGGTTTTCGACACTAAACGGAAGCAAAGATCACACGAAATGGCAATACACGTGCACGCACATAAAACATACAGGTGTGGATACTGCAATGAACATTTCAGCACGCACTGGCGGAAGGAAAAACATATAGCTAGTGAGCACGGAGTGAACTTGCGTGAGATAAAATGCCAAGTGTGCGATAAGGTTTGCCTGACAGCGAATTCTTTGAGGATACATATGAAGAGAGATCATTTGAAGGAGAGGCGTTTCGAATGCAAAGTCTGCGAATACAGATTCTTCGGGGCTCAAGAGTTGAGAGAACATACGGTCAAGCACACTGGTATAAGAGATTACAAATGTGATATTTGTTTGAAGTCGTACGGAAAGAAATCAACTCTGCGTGAGCACATACGAATCCACGCCGACGACAGACGTTTCAAATGCGAGCACTGCCGAGGGGAAGTGAAAGTAAAATTACCCGCAAAAGACACAAATTCATTCAAAGCAATTAAAGAGGAAAGAAACAAACATTTGGATAACATAACAACTATCTTACAAAATACGAATGCCACACCAATACGTTGCGAAAGAGATTCGAGATACGGATGCTGTTTTTGCGCTGAGTTTTACAGAGAACCTGCTGAGCttaaaaagcataatataaCGAAACACCAAAGAGTTTCGGACACCATTATGAGGGGCAAAAAATTGTCCGATTACATCGTCAAACTGGATATAACAGGTCTAAAATGCAACCTTTGCACTCTTCACGTAACTGATCTGACCGAAATGATGGAACATCTTAAAAGTCATAAAAAAACTATCCACGTTGATATAGACAACCACATCGTGCCGTTTATTTTCGAGAACGACGAATTGAAGTGCGCCATTTGCAAGATAGATTTTAACACGTTCCGCAGAGTTTTTCTCCACATGCACAGCCATTACAGAAATCACGTCTGCGATGTTTGCGCTGCCGGATTCATCAATGAGAAATCTTTCGTCGTTCATTACAGGATACATAAAAAAGGAGTTTTCCCCTGTGCGTTCTGTAAGAAAGAGTTCGACACTTACTCCAGGAAGAAAACTCACGAATCTGGAGTGCACACCAATAGCCTTAGGTGCAAATGCAGCTACTGTGGTGAGAGATTCACAAATTCCAGCAAGAAGATGAAGCATATATCGAGCGTTCATAACGTCCGCGTGAGAGATGTGAAATGTAAAATTTGTGGTAAAGGTTGCTCCAGCATGGAATCGTTGAGGGTGCACACAAAACGCGACCATTTAATGGAGAGAAAGTACGAGTGCCAGTATTGCAACAACAAGTACTTTCGACTGAACGAGCTGAAGAATCATTTGATTACGCACACGGGCAACAAACAGTACCCATATAACCAGagacaaaaaagaaataatgaaaagagcaaacaaacatcaaaacacCTGGACAATGTTACCACAATCTTGAAGCACACAAACGCAACTCCTATAGGAACTCACGACGAGAGTATTGGCTACGGCTGTTATTTCTGCGAAAACTTTTACGGAAACCCCAAAGAACTAAAAAAGCATACCAAATTTCTCCACTCAGCAGACTTCGATAACGTTATGGACGGCAAAACATTAAGCGATTACGTTGTCAATCTTGATATAACTGGATTGCGATGTAATTTATGCAATCTCAAAGTTTTATACAGCACGCCAAGTTTAGAGGACATGATGCGACATCTCAGAGACCACAACAAAGACGTGCATATGGATATTGAAAACCATTTGATGCCGTTCAACTTCAAAGGCAACGTACTGAAGTGTGTTATCACAAATTGTCAACAAGAATTTAGAGAGTTCCATAAACTTGCTGAACACATGCATTTCCATTATAGGAATTATGTATGCGAGAAATGCGCAATTGGATTCATAAACGAGACTTCGTATCGGGAACATTTAGTTTCGCATTCAAAACGCGATTATAATCGTGAGGACAGTGAAATAAATATCCATACTGCCGACATAAAGACAGCGGTTGAAGTATATTCGCGGACGCTTAAGAATTGTGATTATTGCgagaaacaatttaaattgcAGCGCAATAAAGAACAGCATATGGCGAGCGTGCACGGTAGAAGGTTTCGTAAAATCAATTGTCAGATATGCTATAAATCTTGCTCGTCGCTGGAAGCTTTGAGAAAACATACTAGAAAAGATCATATGAAACGCAAAGCATGGTACACAGGCTAA
- Protein Sequence
- MEGRGIKKEETEAKRAKRSSPNKVKQEEMRKHGDNIYTMFTYTNATPIRCKNDFGYACCFCTDVYQEPSQLKEHTIECHGTEMKTRFMDGKRLGDYLVKLDITKLRCSICVAELKTLDEALTHLKEHDKPMHLDINNHLMPFNFEGGDLTCAYCNVMFNKFKKLLEHMNRHYRNCVCDICGAGFINRSTFTVHYHGHSKGYFPCQQCQKVFDTKRKQRSHEMAIHVHAHKTYRCGYCNEHFSTHWRKEKHIASEHGVNLREIKCQVCDKVCLTANSLRIHMKRDHLKERRFECKVCEYRFFGAQELREHTVKHTGIRDYKCDICLKSYGKKSTLREHIRIHADDRRFKCEHCRGEVKVKLPAKDTNSFKAIKEERNKHLDNITTILQNTNATPIRCERDSRYGCCFCAEFYREPAELKKHNITKHQRVSDTIMRGKKLSDYIVKLDITGLKCNLCTLHVTDLTEMMEHLKSHKKTIHVDIDNHIVPFIFENDELKCAICKIDFNTFRRVFLHMHSHYRNHVCDVCAAGFINEKSFVVHYRIHKKGVFPCAFCKKEFDTYSRKKTHESGVHTNSLRCKCSYCGERFTNSSKKMKHISSVHNVRVRDVKCKICGKGCSSMESLRVHTKRDHLMERKYECQYCNNKYFRLNELKNHLITHTGNKQYPYNQRQKRNNEKSKQTSKHLDNVTTILKHTNATPIGTHDESIGYGCYFCENFYGNPKELKKHTKFLHSADFDNVMDGKTLSDYVVNLDITGLRCNLCNLKVLYSTPSLEDMMRHLRDHNKDVHMDIENHLMPFNFKGNVLKCVITNCQQEFREFHKLAEHMHFHYRNYVCEKCAIGFINETSYREHLVSHSKRDYNREDSEINIHTADIKTAVEVYSRTLKNCDYCEKQFKLQRNKEQHMASVHGRRFRKINCQICYKSCSSLEALRKHTRKDHMKRKAWYTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -