Paeg002250.1
Basic Information
- Insect
- Pararge aegeria
- Gene Symbol
- -
- Assembly
- GCA_905163445.1
- Location
- NC:1755969-1787642[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0071 0.29 11.3 0.1 1 23 427 449 427 449 0.98 2 11 0.00067 0.027 14.5 0.8 1 23 456 479 456 479 0.97 3 11 5 2.1e+02 2.3 0.7 1 23 483 505 483 505 0.94 4 11 5.8e-05 0.0024 17.8 2.1 1 23 510 533 510 533 0.98 5 11 0.00058 0.024 14.7 0.1 1 23 537 560 537 560 0.96 6 11 0.0095 0.39 10.9 0.1 2 22 572 592 572 596 0.93 7 11 7.2 2.9e+02 1.8 0.3 3 23 628 648 627 649 0.89 8 11 0.0016 0.066 13.3 0.3 2 20 667 685 666 688 0.94 9 11 2.3e-05 0.00093 19.1 0.8 1 23 694 716 694 716 0.95 10 11 8.8e-06 0.00036 20.4 0.5 2 23 724 745 723 745 0.96 11 11 0.0026 0.11 12.6 0.6 1 23 752 775 752 775 0.94
Sequence Information
- Coding Sequence
- ATGGAGTTTTGTATGACTAAAAATGATCTAAGGAGCGAGCCAGAGATTGCAGCTGTATCATCAGCACCACAGttctgCATGATATGTCTGGACACAGACTGTAAACTGTACCCATTGAGCAAATACAACTTGTATTTGGAATTTGGAAATTTGACTGGGATTACGctcCAGAGCGAGATGAAGTTTTCACCACAATTCTGTGCGGAGTGCGCTCAGAGGTTGAAAAACTATGGCAAATTCAGAGACAAGAGCCTGAGAGCGTATCACTTGTTGTCGGAGCTGGTCGAGCAGAACGAACTGttaacaatacaattaatagAGTCAATAAACCGTAAGGACAAACAACTAGAGTCGAATATAGTCAAGAAATCATTCGAGCCGGACCATTGTGACCTTTATTTGCTAGGGCACAAGGATCATGCACAAAAGGTAGATGTGAAGGTGGAAGGCGCAGGTTTAGTTTTAGAACTCGATAAAGCGAGCTTTAATTATGGCATCAAATTCGAAGAGGATTTGCTGAACGTGGAAATGGACATAGATAATGAAGATAATCTATCGAATCGCGATTCAAACGCAGCAGTTGATAAGAAGGAATTAAAAATTGATGTACCCGATTTAGAATTCCTAGACGACGAAATCGATCACGACATGAACTTTCTAGACGATTTCGATGGTTTCGGTAAATTTGTTAATGAAAACGTCGTCAAAAAAGCCACTGAAACTCCGAATAATGTTACTAAAGCCGAAACAAACAAAGAGTTGGTGAATAACGAAAATGAAGTTTGTCTCAGTAATGTTATACTTGTAAGAGATAATATTGACGTCAAAAATGAGAATACACTTGCTAAAGCGGTTAGAGCAAAAACAACACgcaacaaaacaaataagaatgTCCTTTTAACAGATAAAACGAAGTCAGCCAAGCTCAAAATTCAGAGAAAGAATAAAGTAATCTCCAAAAATGTACTCACAAATGATACTAATGATGAATCCAAAAGTAAAACTAATCTCAGAAATACCATAAAAGACAGGACGGATTGTGTTAAATCGAGAACACAAAAATGCAGAAATAATTCACCTACTGATAAAAAGGATACGGCCAGTAAAGAAAGAAATGTTATTGTCAAACGAAATAGAAAGAAGCGAATAGAAGGTCAGGAAAGACAATCAGCTTCAAAGGACGAGTTGAAATTCTTCAATGTCGCCGAAGTAAGCAAAGATGAGCAACTGACAGAGATACAGAGTAGGAAAGAGACGTCCAACTACAAAGTGTCACCTTACAAATGCACTGTATGCTACAAGGGTTTCGTGGACATTGACGCTTACGATGGCCACATGGACAGGCATACTGACAAATTCGGACCATTCGAGTGCTCCATATGCAAAATCCGCGCCAAGGATAAGCACGCGCTCAGCAAGCATATGATTGTGAACCACAGGAACAAATACTTCTGCACCAGATGCGAGTTCGTCACCAACTATAAGAATACGGCAATAGACCACGGCCGCTGGCACGATGGCAAGCAGTACAAATGTCCACATTGCGAGGAGGTTTTCATgAAACAAACCTCGTACATGTCCCACATACGTATAAAGCATCCGTCGGACTTCGTGTGTACTCTCTGCGGCTACTCGTTCATCGGCGAGAGGGGACTGAAGTTGCATATCAGCATTAAACATCGCACCGACAATACGCAGAACTTAAACGGTCCTACGTGCGAGGAGTGCGACATTCGCTTCGCGTCCGACACAGCGTACGAACAGCACATGAAGGTTTCGATTAAACACGCACCTGCCGATAAGCTGAAACCCAATTGCCCTCCCAAGAAGTATCAATTGATTTGCAAGAAGAGAAAAAGGAACATTCCGAGGAAAGTTGACTGCGAGCAGTGCGGTATGGTATTGGAAGGCGGCAGGAAATACGCGGTACATTTCAGGATACACCATCCGGATAAGAACCGGACTAAGTACTCCGGCAACGCTAGCAAGACGCCGATAATGTGCGAGCTGTGCGGGAAAGTTTTACCGAGCTTATCCCACCTCCGCTACCACATGCCCTTCCACGCGGACCAGAAGCAGTTCAAATGCGACATCTGCAACAAGCAGTTCGCGTTCAAACGCAACCTGACCAACCACGCGGTGATACACGACGAGGCGCGCCCGCGGGTCTCGTGCACTGTGTGCGGCAAGAACGTGTCCAATAAGAACAATCTGTGGAGGCATATGTTTTCGCACAAAGAAGCGAGGCCCTACTATAAGTGTGATGTTTGCGACAAAAACTTTGCAAGCCTGCAGGGAAGAAACGAGCATATACTGCACGTGCATAGTAACGTGCCCCGGCCGAAGAGAAACCGCGTTCCTAGACCTAGCCCCAAGGTCACGCAACATGCTAGACACACTACAGACACAAGTGACTCTCAGGACTCTTAA
- Protein Sequence
- MEFCMTKNDLRSEPEIAAVSSAPQFCMICLDTDCKLYPLSKYNLYLEFGNLTGITLQSEMKFSPQFCAECAQRLKNYGKFRDKSLRAYHLLSELVEQNELLTIQLIESINRKDKQLESNIVKKSFEPDHCDLYLLGHKDHAQKVDVKVEGAGLVLELDKASFNYGIKFEEDLLNVEMDIDNEDNLSNRDSNAAVDKKELKIDVPDLEFLDDEIDHDMNFLDDFDGFGKFVNENVVKKATETPNNVTKAETNKELVNNENEVCLSNVILVRDNIDVKNENTLAKAVRAKTTRNKTNKNVLLTDKTKSAKLKIQRKNKVISKNVLTNDTNDESKSKTNLRNTIKDRTDCVKSRTQKCRNNSPTDKKDTASKERNVIVKRNRKKRIEGQERQSASKDELKFFNVAEVSKDEQLTEIQSRKETSNYKVSPYKCTVCYKGFVDIDAYDGHMDRHTDKFGPFECSICKIRAKDKHALSKHMIVNHRNKYFCTRCEFVTNYKNTAIDHGRWHDGKQYKCPHCEEVFMKQTSYMSHIRIKHPSDFVCTLCGYSFIGERGLKLHISIKHRTDNTQNLNGPTCEECDIRFASDTAYEQHMKVSIKHAPADKLKPNCPPKKYQLICKKRKRNIPRKVDCEQCGMVLEGGRKYAVHFRIHHPDKNRTKYSGNASKTPIMCELCGKVLPSLSHLRYHMPFHADQKQFKCDICNKQFAFKRNLTNHAVIHDEARPRVSCTVCGKNVSNKNNLWRHMFSHKEARPYYKCDVCDKNFASLQGRNEHILHVHSNVPRPKRNRVPRPSPKVTQHARHTTDTSDSQDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -