Paeg002298.1
Basic Information
- Insect
- Pararge aegeria
- Gene Symbol
- -
- Assembly
- GCA_905163445.1
- Location
- NC:5835748-5857705[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.016 0.67 10.1 0.7 2 23 263 285 262 285 0.95 2 12 0.00024 0.0098 15.9 0.9 1 23 293 315 293 315 0.98 3 12 2.5 1e+02 3.2 0.4 1 19 319 337 319 339 0.84 4 12 0.0019 0.08 13.0 0.3 3 23 350 372 349 372 0.96 5 12 0.0044 0.18 11.9 1.0 2 21 377 396 377 397 0.92 6 12 0.00015 0.0061 16.5 0.6 2 23 413 434 412 434 0.94 7 12 0.00029 0.012 15.6 0.3 1 23 439 461 439 461 0.98 8 12 0.00011 0.0044 17.0 6.2 1 21 470 490 470 495 0.95 9 12 0.0053 0.22 11.7 4.7 1 23 503 526 503 526 0.92 10 12 0.0015 0.06 13.4 0.3 1 23 532 555 532 555 0.96 11 12 0.016 0.67 10.1 0.4 3 19 569 585 567 586 0.89 12 12 0.0048 0.2 11.8 0.3 1 23 599 622 599 622 0.97
Sequence Information
- Coding Sequence
- atgggtgaaataaacattaatattgaGGGATACAATGTAAACGGAATATGTGTGGGATGTCTTAATTACAACAGAAAAATGTTTTACAACGACGAAGTGAAACGGTGCTACAAGATTTTAGGAAATATCGATGTGCCTGATGGCTTATCGATTCAGGTGTGCTGGGAATGCCTGGCCCATACACAGAATGTTATGAGGTTTAGACGGCAAATAATTAAGTCCTTCGGTATATTGATTGAGTATTCTGAAAAGCAATTCTTTCTGAACTCGCCCACCGATTTATCTAGTCATGCAGTGCAGAGACTTTCATCCAAAACCTTTGAAATTTCCTCTGAACTACCCCCCAAGTTTGTAACTCCAGTGGAAGAAATAAAGTATGAGGTTGAAAAGACTGAAAATGTTGAACAGGCGATAGAAATTCATAGTAAAATCCAAGAGCTAGATAATGCTGAAGTAGAAGTAAAAGAAGAGTTCGAAGAGACTCAGTCGGATATATTCCAATTCAGTGTGGACGAGTACTCACAGGATCACACCCAGCAGAGCTCGGAAGATGACCTAGTTCTATCCAAGTTGAAGACTGAAGATGGCAAGAAGAGAAAGAGAGGTAGAAAAAAGAAAGTTGACAGGAAGAAGGTTAAACGGAAACTGGAAAAGGCTAAAATAAACAGTAGAAAGCTGAAGAACCTTCCAGAGAACCTGGTGAAGCTTTACAAAATGGACGAAGACGAAATGCTTCGCGTCAGACAGACGGACGCGGCGAGCGAGGCGTTTCTGCGCCTGCGCAACAAGTGCGCGCACTGCCTCATAGGGTTCAACACCGCCAAGCAGATGGAGGTGCATATGAACGGGAAACATGCTCCGAAAAGTGAAAACGATTATCAATGCGATATATGCAAGGCGTTCTTCATCACAAAagacaatataaaaatacacaagAAGCTACATCTCATCGCTTATAGATGCCGCGAATGCAATTTAGTGACGACAGTGAAAAAGGTCATGGTTGCCCACGAGTGTGCCAAATTCGCTATAGAATCGGTCAACATTTGCCCGGACTGTCCGGACAAATCGTTCAGCACGAAGGCAAAACTCTTGTACCACAGAAACGTAACACATCAAGAGAAGCCGCAGTGCGATTGCTGTGGTAAAGTTTTTGCGAACAAAATGACCCTCAAATATCATCTCAAAATACTTCCCCAGAATAAAGATGAGAAACAAAAGGAAAAGCTAACAATACCTTGCAAGGGCTGTGATAAAGTTTTCCACTCGAAGAAAAGTTACAGAGCACACGTGGTTATCCACGACGGGCTCTCGTACCCGTGCGTGGTCTGCGGGAAGCTGTTCCAGTGGAAACGGAACCTGGCGCGCCACATGCGCAACCACCGAGAGAAGGAGCAAGGGGCGACCCACCAGTGTCGGGAGTGCGGGAAGAGCTTTTCGAGCCGGGACTGCTACAACAATCATATGAGGTTCAGCAAGCGACACGCGCACGAGAACTCGTACATCCACTCGTGCCATTTTTGCGGCAAAAAGTTCGCGACCCGCTGGTGTATGAACGATCACATTGATTGGGACCACTTGAAAATCATCAAATACCAGTGCTCAATATGCTTTAagCCATTCAAAACAGCCAAGATAATGGTGGCacatatgaataatatacacgaGGGCAAAAACAAGAGGGAACCGGACGGTGAGCATCTTTGCGAGATATGCGGGAAATCTTATAAGACTGTTAAGAGACTGAAGGGCCACGTGTGGGCGATGCACACCAACCGCTCGGAGTCGAAGAGCTTCAAGTGTCCGCTTTGTCCGGCCACGTTCAGCTGGCAGACCTCCATATACAAGCATATTAAGATGATGCATTACACCAAGCGGCTGAAGaTTTCCCAGCAGCCCCGTGTAGCAGCCAAGAAGCCGGAGCCCTACCCGGGCATCGAACTGGCGAACCGGATGCAGTACTTCCAACAGAACATCGCCGGCAATCTGGCGCAGAACGTACCGCCGCCTCTTGATATTGTACATAGTAGCTGA
- Protein Sequence
- MGEININIEGYNVNGICVGCLNYNRKMFYNDEVKRCYKILGNIDVPDGLSIQVCWECLAHTQNVMRFRRQIIKSFGILIEYSEKQFFLNSPTDLSSHAVQRLSSKTFEISSELPPKFVTPVEEIKYEVEKTENVEQAIEIHSKIQELDNAEVEVKEEFEETQSDIFQFSVDEYSQDHTQQSSEDDLVLSKLKTEDGKKRKRGRKKKVDRKKVKRKLEKAKINSRKLKNLPENLVKLYKMDEDEMLRVRQTDAASEAFLRLRNKCAHCLIGFNTAKQMEVHMNGKHAPKSENDYQCDICKAFFITKDNIKIHKKLHLIAYRCRECNLVTTVKKVMVAHECAKFAIESVNICPDCPDKSFSTKAKLLYHRNVTHQEKPQCDCCGKVFANKMTLKYHLKILPQNKDEKQKEKLTIPCKGCDKVFHSKKSYRAHVVIHDGLSYPCVVCGKLFQWKRNLARHMRNHREKEQGATHQCRECGKSFSSRDCYNNHMRFSKRHAHENSYIHSCHFCGKKFATRWCMNDHIDWDHLKIIKYQCSICFKPFKTAKIMVAHMNNIHEGKNKREPDGEHLCEICGKSYKTVKRLKGHVWAMHTNRSESKSFKCPLCPATFSWQTSIYKHIKMMHYTKRLKISQQPRVAAKKPEPYPGIELANRMQYFQQNIAGNLAQNVPPPLDIVHSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00953845;
- 90% Identity
- -
- 80% Identity
- -