Paeg002404.1
Basic Information
- Insect
- Pararge aegeria
- Gene Symbol
- -
- Assembly
- GCA_905163445.1
- Location
- NC:6876075-6880893[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0027 0.11 12.6 0.5 3 23 69 90 68 90 0.98 2 17 0.0064 0.26 11.4 0.7 2 23 160 181 159 181 0.96 3 17 0.35 14 5.9 0.7 1 21 185 205 185 206 0.94 4 17 1.1 44 4.4 0.0 1 20 247 266 247 267 0.95 5 17 0.54 22 5.4 0.1 2 23 296 318 295 318 0.95 6 17 0.51 21 5.4 1.2 2 23 343 364 342 364 0.92 7 17 0.00014 0.0057 16.6 0.0 1 23 368 391 368 391 0.97 8 17 0.19 7.6 6.8 3.3 1 23 395 418 395 418 0.96 9 17 0.0017 0.068 13.2 1.9 1 21 500 520 500 521 0.96 10 17 0.0046 0.19 11.9 1.2 2 23 593 614 592 614 0.97 11 17 0.012 0.51 10.5 0.1 1 23 618 640 618 640 0.95 12 17 0.3 12 6.2 1.3 1 17 645 661 645 668 0.77 13 17 0.036 1.5 9.1 0.2 1 23 674 697 674 697 0.94 14 17 0.0036 0.15 12.2 1.9 1 23 704 727 704 727 0.97 15 17 9.9e-05 0.004 17.1 0.8 1 23 734 756 734 756 0.96 16 17 1.4e-06 5.8e-05 22.9 4.0 1 23 762 784 762 784 0.98 17 17 0.00035 0.015 15.4 0.2 2 23 788 810 787 810 0.95
Sequence Information
- Coding Sequence
- ATGCATTGGAATAACAATAATGATATGCTTCTTTCTTTTTTAGGACCTACAAAGGATAGCGAGGAActcaaagaaaaagaaagaaaacaaaaaatgagGTTATTCGAAAGGTCCGTTAAGCAGAACCCTCTACGACAAAATGCTGTACTAGTTCTCAAATATTCGACGGCTATACCGTTTAAGACCCGTTTCAATAGAATCCTCTGTTCTTACTGCTATATAGAATTTGAGAATATTGAAACATTGAGAGATCATATGAAAACTAAACATGCAAAGGTCGACCACAATAGCGCTTTTTACAAAGTAGTGGATGACCTGAAAATTGATATAAGCAACTTCAAATGTAACCTATGTATGCAAGATGTAGACAGTGTAGAAATATTTATGACTCATTTATTACGCGATCACGGTAAAGCAGTGAACTTTGAAATACCTTTTGGTGTGTTGCCTTATCGACAGAACGATGCCGGCGAATGGATGTGCTTGTATTGCAAGAAAAAGTTTGAAGGATTCTCAGAAATGAATGGACATTTGAGAAGTCATGCTACAATATTTACTTGCGATCAGTGTAGCGCCACCTTCCTGTCTTACCACGGACTCAAACAGCATgagcgtggtttccggtgtgaCAAATCTGGGTATAAACCACGATACGGTCTAGCTTTGAGGCAAAGGCTTAACACAGAAATCATCTTGCAATGTTCCACGGCCTGGCCGTTTAGGACTTGGGGCCAGAACTTTAACTGTTCTCTTTGTCGCGTCCAAGCGAATGATCCTGGTGGATTACGTGCACACATGGCATGCCGTCACGCGAATTTCGACATCAAGCTTGTGTTCAGCAGAAAGCTACGTAAGGAATACCTTAAATTGGATCTTACcgatttaaaatgtaaactttGCTTCATGGGCATAGAATCTCTGGACGATCTTTTGTCCCATTTAAAAAACGTCCATAAACAACCGATCGACGATGACGTTGAGCTGTCTGGGGTTATGCCCTTCAAACTGAAGGATGGATCGAGTTGGCATTGTGCCATATGTAAAAGTCAGTTCTCCGATTTCTTATCCCTAAACAAGCATACCGTTGAACATTTTCAGAAGTACGTTTGCGACACTTGTGGCGAGGGTTTTATCACTGAAGCGGCGCTAAGGGCTCACGCAAAGATACCTCACGATAATAAGCACAACTGCCGTAGATGCAAAGCGACGTTTCAGACTTTGGAGGAGAGGAATATACATATGAAAACCCAGCATCCCATGCCTTACTTGTGCGCGTATTGTAAAGAGCGGCCATTGCCAAGGTTCGCATCTTGGGAGTTACGAAGGCGCCATCTAATCGAGAGCACAGAAAATTTACATTTAGGTGAAAcgtttaaaattgaaaaacgtCGGTATCAAAGAAGCGCGAGGGCCGAATCGAGGTTTGTTACCAAGAAAAACGCAAGCGCATTACTGGAATGTTGGTCTATTTGCCCATTTAGATGGAAAAGGAACAGGTTCAAATGTGCATATTGCGAGGAAAACTTTACTGATTGCACAAAATTGAGGACCCATGTCAGGCTGTGCTCCACCCAACACAGCATCAAAGACATATACAGCAAGTTTAAAGAAATGACTCTAATAAATGTAGATATCACTGAAGCCTCGTGCAGAATTTGTGATTTACCATATGGTGAAGTGAATGAAATGCGTCACCACGCCGCCGAACATGGCTATGAGATTGATACTTCACATCCGGATGGTGTCCTGCCATTTTATTTGGACAAAGAGTCTTGGAGATGCGTTATATGCCATGAGATATTCAACAACTTCTTAAAACTCTACGAACACATGAATACTCACTACCAGCATTATATATGCGCGACTTGCGGCAAAGGGTACATGACAGCGCCTCGCCTGAGGAAGCATTCGGAAGTTCATATAACAGGGACCTTTCCGTGTGATAAATGCAAAAGAGTCTTTACAATGAGAGCAGCAAGAGATTACCACAAAAGTCACGCCCACGCTAAAGGACCTCGATATGAATGCCCGCAATGTAATATGAGATTCGGTGGCTATTACGAAAGAATGAATCATTTAAACGAAGCACACAGAGAGAAAGAAGTTGCTTATAAGTGTGCTCATTGCGAGCTATCTTTCAAAACAAGCGGAAAACGTGCCACTCACGTGAAATCCATACATTTCCCCCAGCAACGTAACTTTGCTTGTCCATTCTGCAAATGGTTCTTCAAAACTGGCTACGAGTTGAAAAGGCACATAGTCCGGCATACAGGGGAGAGAAATTTTTGTTGTACGCTTTGCGGGAAGACGTTCCCAAGGAACAGAGCGTTGAGAAAGCACTTGAAAACGCACGAGGATCTGAATTGTAAATGGTGCGGTGTAATGTTTAGCCAGAAGGCATTGCTGGTGGATCATTTCCGAATAAATCATCCAGACATCAGTGATTTCATGCTAACTGGCTTGGAGAAAATCTAG
- Protein Sequence
- MHWNNNNDMLLSFLGPTKDSEELKEKERKQKMRLFERSVKQNPLRQNAVLVLKYSTAIPFKTRFNRILCSYCYIEFENIETLRDHMKTKHAKVDHNSAFYKVVDDLKIDISNFKCNLCMQDVDSVEIFMTHLLRDHGKAVNFEIPFGVLPYRQNDAGEWMCLYCKKKFEGFSEMNGHLRSHATIFTCDQCSATFLSYHGLKQHERGFRCDKSGYKPRYGLALRQRLNTEIILQCSTAWPFRTWGQNFNCSLCRVQANDPGGLRAHMACRHANFDIKLVFSRKLRKEYLKLDLTDLKCKLCFMGIESLDDLLSHLKNVHKQPIDDDVELSGVMPFKLKDGSSWHCAICKSQFSDFLSLNKHTVEHFQKYVCDTCGEGFITEAALRAHAKIPHDNKHNCRRCKATFQTLEERNIHMKTQHPMPYLCAYCKERPLPRFASWELRRRHLIESTENLHLGETFKIEKRRYQRSARAESRFVTKKNASALLECWSICPFRWKRNRFKCAYCEENFTDCTKLRTHVRLCSTQHSIKDIYSKFKEMTLINVDITEASCRICDLPYGEVNEMRHHAAEHGYEIDTSHPDGVLPFYLDKESWRCVICHEIFNNFLKLYEHMNTHYQHYICATCGKGYMTAPRLRKHSEVHITGTFPCDKCKRVFTMRAARDYHKSHAHAKGPRYECPQCNMRFGGYYERMNHLNEAHREKEVAYKCAHCELSFKTSGKRATHVKSIHFPQQRNFACPFCKWFFKTGYELKRHIVRHTGERNFCCTLCGKTFPRNRALRKHLKTHEDLNCKWCGVMFSQKALLVDHFRINHPDISDFMLTGLEKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -