Paeg002164.1
Basic Information
- Insect
- Pararge aegeria
- Gene Symbol
- -
- Assembly
- GCA_905163445.1
- Location
- NC:924608-944862[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00017 0.007 16.4 1.5 1 23 224 246 224 246 0.99 2 12 4.8 2e+02 2.4 0.1 1 23 253 276 253 276 0.81 3 12 2 80 3.6 3.2 1 23 280 302 280 302 0.91 4 12 0.017 0.7 10.1 1.2 1 23 307 330 307 330 0.94 5 12 0.0011 0.046 13.8 0.1 3 23 336 357 335 357 0.97 6 12 0.013 0.52 10.5 2.3 2 23 364 386 363 386 0.93 7 12 6.4e-05 0.0026 17.7 0.2 3 23 397 417 396 418 0.94 8 12 0.00027 0.011 15.7 0.5 3 23 425 446 423 446 0.96 9 12 9.6e-06 0.00039 20.3 0.9 2 23 467 488 466 488 0.97 10 12 0.00024 0.0097 15.9 3.4 1 23 494 516 494 516 0.98 11 12 7.2e-06 0.00029 20.7 1.9 1 23 522 544 522 544 0.94 12 12 7.6e-06 0.00031 20.6 1.7 1 23 550 573 550 573 0.97
Sequence Information
- Coding Sequence
- ATGGCCGGATTTTTGGCGTGCCGTGTGTGCCTTGCGACGGACAATGTAAAACTGTACGATATGTGTCAATTCAATTTTGTAACAGCATACGAAATTCTTACTGGAGTTgagTTTACCATACAAGATGGCCTGCCGCAACACATCTGTAACTACTGCAGTACACAGCTGATGAAGTGTATAACGTTTAAAGAGAAGTGTTGCACCACTCGAGAGATATTGCTGAATGCTATCGGACAGAATCAGGAGTTGACATTGGAAAGTCTAAGAACAATAAATCACCAGTTTGCTTTAAACCTGGTACATGAAACCAAATATCCAGATGAATACATAGAGTATACGGAATCAGAGATTAAAGAGGAGGTGGACAGCATAGACTATGTAGACTTCAAGGCGGATGAACCCaagagaaagaaaagaaaaaagaagaaaataaaacaggaAATAGAGGACATAGTGAAACTGGAAgacgatgaaataaaaaaagacatttACGATGACGACGACCCGAACGACACCGTCGATAGCATCGTCTACGACAGCGACGCGATCCAAGAAGAGCCACCCACCTCCGAGGATTTGAAAGACGTCGAGGTTGTGTACCTTAGCAAAGCCGACCAGCTGTCCGAGATAGAGCAGAGAAAAACTTCGTCCAACTATATCAACTCGTTTTACAAATGCGATAAATGCTTTAAAGGTTTCATAACCGACGCCACCTATAGAAACCACATGCTGAGTCACGATCggGAGCGTGGCGAGTTCGTGTGCGAGATATGTCAGTCCCGCTGGGGGGAGGCGAGGCAGCTTAGAACCCATATCGTGAACTCGCACGAGAGGAAGTATATGTGCAAGCTGTGCGACCACGTGTCCAGATCTAGTCACAGAGCCAAGGAGCATTCAAACTGGCACAACGGGTTTACGTTTGATTGTAAAGTATGCGGGGCAAGTTTCGCTAAATCCACGAGTCATCTGACCCACATCCGTCTGCAGCACCCGTCGAACAACGCTTGCGACATCTGCGGCGAGTCCTTCATCGGAGAGTTTGGATTGCGGATGCATAAGCGAAAAGCGCATAACTCAAGCTCAACGTCCAGCTGTACCCAGTGCGGTACCAAGTTCCACAGCATAGAAGCTCTGGCGCGTCACCTACACCTGTCGCACAACGACACCTGCGATGAGAACATGAGGCCGTGCCCGGAATGCGGAGAGGGCTACCCGTCCGAAGACGACCTGAAAGAACACATGCTGCACCATCACAAGGAAGAAAGCGTGAATTGTGACGATtGCAAGCGAACGTTCTCCAACGAGCGCTCCTACGCCATACACTACCAGCGGGTCCACCTCGGGGTTAAGCTGAAGCAAAACAAGCCGAGGAGTCTCAAACGGCCCAGCGAGAGTGTGGTGTGCGAGATATGCGGGAAAAAGTGCATTacaaAAGCAACGCTGACGTACCACCAGCGTATACACACCGGAGAGAGACCGTTCCATTGCACAGAATGCCCGAAGAAGTTTAGCGTTTTCCAGAGACTACAGATTCACTTGCGCACACACACGGGCGAGAGTCCGTACCAATGCAAGAACTGCCCCAAGGCGTTCAAGCACAAGGCCGCGCTTAATAGACACGATCGGGTTCATACCGGTGCGAAGCCCTACAGTTGCGCACATTGCGGGAAGTCTTTCTCGCAGTCAAACTCCATGAAGCTTCATGTCAGCACCGTACATCTGAAGCTACCGGCGCCGTACCGCGCGCGCCGACCCAAGATAAACTGA
- Protein Sequence
- MAGFLACRVCLATDNVKLYDMCQFNFVTAYEILTGVEFTIQDGLPQHICNYCSTQLMKCITFKEKCCTTREILLNAIGQNQELTLESLRTINHQFALNLVHETKYPDEYIEYTESEIKEEVDSIDYVDFKADEPKRKKRKKKKIKQEIEDIVKLEDDEIKKDIYDDDDPNDTVDSIVYDSDAIQEEPPTSEDLKDVEVVYLSKADQLSEIEQRKTSSNYINSFYKCDKCFKGFITDATYRNHMLSHDRERGEFVCEICQSRWGEARQLRTHIVNSHERKYMCKLCDHVSRSSHRAKEHSNWHNGFTFDCKVCGASFAKSTSHLTHIRLQHPSNNACDICGESFIGEFGLRMHKRKAHNSSSTSSCTQCGTKFHSIEALARHLHLSHNDTCDENMRPCPECGEGYPSEDDLKEHMLHHHKEESVNCDDCKRTFSNERSYAIHYQRVHLGVKLKQNKPRSLKRPSESVVCEICGKKCITKATLTYHQRIHTGERPFHCTECPKKFSVFQRLQIHLRTHTGESPYQCKNCPKAFKHKAALNRHDRVHTGAKPYSCAHCGKSFSQSNSMKLHVSTVHLKLPAPYRARRPKIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00954877;
- 90% Identity
- -
- 80% Identity
- -