Basic Information

Insect: Pararge aegeria
Gene Symbol: -
Assembly: GCA_905163445.1
Location: NC:13379506-13399503[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0023 0.093 12.8 6.1 1 23 181 203 181 203 0.99

2 11 9.7e-05 0.004 17.1 0.6 1 23 209 231 209 231 0.98

3 11 0.00013 0.0051 16.8 1.9 1 23 237 260 237 260 0.96

4 11 0.022 0.9 9.7 3.6 1 21 266 286 266 288 0.95

5 11 0.00018 0.0072 16.3 4.0 1 23 294 316 294 316 0.99

6 11 7.3e-05 0.003 17.5 3.3 1 23 322 344 322 344 0.98

7 11 0.0017 0.068 13.2 1.0 1 23 352 375 352 375 0.97

8 11 0.015 0.63 10.2 7.2 1 23 381 403 381 403 0.97

9 11 0.00013 0.0052 16.8 2.3 1 23 409 431 409 431 0.98

10 11 3e-06 0.00012 21.9 1.9 1 23 437 460 437 460 0.96

11 11 6e-06 0.00024 21.0 4.4 1 23 474 496 474 496 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0023	0.093	12.8	6.1	1	23	181	203	181	203	0.99
2	11	9.7e-05	0.004	17.1	0.6	1	23	209	231	209	231	0.98
3	11	0.00013	0.0051	16.8	1.9	1	23	237	260	237	260	0.96
4	11	0.022	0.9	9.7	3.6	1	21	266	286	266	288	0.95
5	11	0.00018	0.0072	16.3	4.0	1	23	294	316	294	316	0.99
6	11	7.3e-05	0.003	17.5	3.3	1	23	322	344	322	344	0.98
7	11	0.0017	0.068	13.2	1.0	1	23	352	375	352	375	0.97
8	11	0.015	0.63	10.2	7.2	1	23	381	403	381	403	0.97
9	11	0.00013	0.0052	16.8	2.3	1	23	409	431	409	431	0.98
10	11	3e-06	0.00012	21.9	1.9	1	23	437	460	437	460	0.96
11	11	6e-06	0.00024	21.0	4.4	1	23	474	496	474	496	0.97

Sequence Information

Coding Sequence: ATGCCGCCTCCTGAGAAGAAAAATCCGGCAAAATCAAAAACTATACTGCAGACTTATTTGGATTCTTTTGAACAAGAGGATGACGAGGAGCCAACAACAGTTATTGCAGttAATGGTAGTGGAGATGAAGCTGATACAGGAGTTACTTACTTTGTGGATGAAGAGGGTCGGTACTACTACCAGCAATCAGGAGACGATCAGAATCTTGTCTCTCTGCCCACGGAGAGAGATGAAGAGAATGCAGAGataTCTCAGGAAGCGCAGATGTTAGTGGATGGAGAGGGCTATCAAACGGTGACATTTGTCCCTTCGGAAGGCGGTGGTGCTGAATTGAGTTACGTGCTGGTCATGCCTGAGGAAGTAGAAACGAAATCTGTGCTAAGCGTCGATATTAAGGTAGATAAGGATGAAGATAAAAGCTGCGATGTATACACGTTTGAGGATGAAGAAGACGATGACGCTGCTGACGAAATTTCCGACGATCCAGATGACGCAAAGaATAAACCACCTTCGAAGCGCAGTAAGAATATTCGGCCGCATTTCACTTGCAATTTTTGTTCGTACACAAGTCACAGACGGTACCTCTTGCTGCGCCACATGAAGACTCATTCGGAAGAGCGTCCGCACAAGTGTGGGGTTTGTGAACGTGGCTTTAAGACAGTGGCATCATTGCAGAACCATGTGAACATGCACAATGGTATAAAACCACATGTGTGCAAATACTGCAAAAGCCCGTTCACTACATCAGGGGAACTAGTTCGCCACGTTCGCTACCGCCACACACACGAAAAGCCCCACAAATGCAGCGAGTGTGACTACGCATCAGTTGAGTTATCCAAACTGAGGCGCCATTTGCGTTGCCACACTGGTGAAAGACCGTACCAGTGCCCCCATTGCACGTACGCGTCCCAGGACACGTTCAAGTTGAAACGTCACATGCGGACGCACACTGGCGAAAAACCCTACAAGTGCGACAGTTGCAACATGTGCTTCACACAGTCGAACTCTCTCAAGGCTCACAAACTAATACACAATGTGTCAGAAAAGCCTGTGTTCCCGTGTGAGCTTTGTCCGACGAAATGTGGCCGAAAAACTGATCTACGAATCCACGTGCAAAAACTTCACACTTCCAATAAACCGCACAAATGCAAAAGATGTGGCAAATCGTTCCCAGATCGTTATTCATGTAAAATTCATAACAAGACCCACGAGGGTGAGAAGTGTTTCAAATGCGAGCTCTGTCCGTATGCTTCCACTACACTACGTCATCTCAAATCCCACATGCTCAAGCACACTGATGAAAAACCTTTTGTCTGTGACCAGTGTGACCAATCCTTTCGgcAAAAGCAACTATTGCGACGTCATCAAAACCTGTATCACAATCCGAACTACGAACCAAAGCCGCCAAAGGAGAAAACTCACACTTGCCACGAATGCCAGCGAACATTCGCTCATAAGGGCAATCTGATCCGTCATCTGGCTATACATGATCCTGACTCAGGCCACCTTGAGAGGGCGCTGGCACTTAAATTGGGGCGGCAGAAGAAAATCAAGTTTGTGAATGGAAATGCTAAGACCGATGAATCCGATAATGACAATGAGGAAATAATGAAATTGGATTTGGGTGACAATCAACTGGAGCGCGGCGAATTGCTGACGGTGGCGGACGGTGATGGGCAGCAATATGTTGTGTTGGAGGTTATCCAGGCGGACGACACTGACGATCAGCAGCTCATCATCCCCTCCAACGAATACATCGTGGAAGAGGAAGAAGaagaagaagaagacgaagAAATGGATAAGAAAGAAATTTTACAGCAAATAAATGAGAGAGCTTTGGAGAAATCAATCAAACTTGAAAAAGATGTTGATACCTGCTTTGGTTTTGATGAGGATGACGATGGTGATGAGGAAGAAGTGGAAATTAATTACAAAGATAAAGTTGAATTGCATAATATGACTTAG
Protein Sequence: MPPPEKKNPAKSKTILQTYLDSFEQEDDEEPTTVIAVNGSGDEADTGVTYFVDEEGRYYYQQSGDDQNLVSLPTERDEENAEISQEAQMLVDGEGYQTVTFVPSEGGGAELSYVLVMPEEVETKSVLSVDIKVDKDEDKSCDVYTFEDEEDDDAADEISDDPDDAKNKPPSKRSKNIRPHFTCNFCSYTSHRRYLLLRHMKTHSEERPHKCGVCERGFKTVASLQNHVNMHNGIKPHVCKYCKSPFTTSGELVRHVRYRHTHEKPHKCSECDYASVELSKLRRHLRCHTGERPYQCPHCTYASQDTFKLKRHMRTHTGEKPYKCDSCNMCFTQSNSLKAHKLIHNVSEKPVFPCELCPTKCGRKTDLRIHVQKLHTSNKPHKCKRCGKSFPDRYSCKIHNKTHEGEKCFKCELCPYASTTLRHLKSHMLKHTDEKPFVCDQCDQSFRQKQLLRRHQNLYHNPNYEPKPPKEKTHTCHECQRTFAHKGNLIRHLAIHDPDSGHLERALALKLGRQKKIKFVNGNAKTDESDNDNEEIMKLDLGDNQLERGELLTVADGDGQQYVVLEVIQADDTDDQQLIIPSNEYIVEEEEEEEEDEEMDKKEILQQINERALEKSIKLEKDVDTCFGFDEDDDGDEEEVEINYKDKVELHNMT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -