Basic Information

Insect: Pararge aegeria
Gene Symbol: -
Assembly: GCA_905163445.1
Location: NC:9457937-9465002[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0017 0.069 13.2 2.3 3 23 59 79 57 79 0.98

2 12 7.9e-07 3.2e-05 23.7 2.7 1 23 244 266 244 266 0.99

3 12 2.9e-05 0.0012 18.8 4.1 1 23 289 311 289 311 0.98

4 12 0.0063 0.26 11.4 3.6 1 23 317 339 317 339 0.97

5 12 0.0002 0.0081 16.2 2.8 1 23 345 367 345 367 0.99

6 12 0.0093 0.38 10.9 2.2 1 23 373 395 373 395 0.96

7 12 5.5e-05 0.0022 17.9 3.6 1 23 401 423 401 423 0.99

8 12 0.00049 0.02 14.9 1.8 1 23 429 451 429 451 0.97

9 12 0.00013 0.0055 16.7 2.1 1 23 457 479 457 479 0.99

10 12 0.00021 0.0085 16.1 4.5 1 23 485 507 485 507 0.97

11 12 6.2e-05 0.0025 17.7 3.5 1 23 513 535 513 535 0.99

12 12 0.00034 0.014 15.4 7.4 1 23 541 563 541 563 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0017	0.069	13.2	2.3	3	23	59	79	57	79	0.98
2	12	7.9e-07	3.2e-05	23.7	2.7	1	23	244	266	244	266	0.99
3	12	2.9e-05	0.0012	18.8	4.1	1	23	289	311	289	311	0.98
4	12	0.0063	0.26	11.4	3.6	1	23	317	339	317	339	0.97
5	12	0.0002	0.0081	16.2	2.8	1	23	345	367	345	367	0.99
6	12	0.0093	0.38	10.9	2.2	1	23	373	395	373	395	0.96
7	12	5.5e-05	0.0022	17.9	3.6	1	23	401	423	401	423	0.99
8	12	0.00049	0.02	14.9	1.8	1	23	429	451	429	451	0.97
9	12	0.00013	0.0055	16.7	2.1	1	23	457	479	457	479	0.99
10	12	0.00021	0.0085	16.1	4.5	1	23	485	507	485	507	0.97
11	12	6.2e-05	0.0025	17.7	3.5	1	23	513	535	513	535	0.99
12	12	0.00034	0.014	15.4	7.4	1	23	541	563	541	563	0.98

Sequence Information

Coding Sequence: ATGTGGGTGGATGATGCTTATAAAGAATGCTCAATGTCCCATAATCCTGTTAAGTTAGAAGGAAGTCTGTCTTATGATGCTGTATGTATATCTGTGAAAATAGAACCAGATGCTTCCAGCACTGTTCAAGTGGACGTAAAGTATCCGCTGAAGTATGAAAGTGCTACCTTCGGATGTACCATTTGCTTCCAGGAATTTTCCCACGAGCATGACTACAATGCACACATGAGCGTGCATTTACAGCTTGCTGACTGCGAGGCTTCACGAACATACCAGCCTCGTACAACTGCAAGCTCTGGCTGCCAACCCTCTCACTTCTCAGAGCACAAGTATGCCGTTCAGAAGCTGTATGACTCACGCCCCTCTGCAGATTTGGCTCAAACTCTAGtcgCTAATCCGCACGCGAGACTTGCGACAAATAACGAACTGCCGCTAACTGAAGAAACCGACAGAAGCAAGAAACGAAAACTAGTGCATGAAATCAACGAATTAGGAATTAAAACAAACACCACTgtgaataaattaacaaaacgtGTGAAAATTGATAGAAAATTTGTTGAATCTAGAAAATCTATTAGCACTTGTGACAATCATTATGTAACTGGCTCTAAAGATTCCCATAGTGGAAACAAAGCCACAGAAGATAGGAgcagtaaaacaaaaacttcacTAGAAGCAACTGAATGTACACTATATGGCATTAATGTACGTTCTACTGAGGGAATATGCTTTAAATGCGACTTCTGTCAAAAGACGTTCAAACGGAAAAGTCTCTTAGTTGAACACATAAAGTCACACAAGCTATGTCAAGACATAAGTGGAAGTAACCTCGAGCAAATGAAAACGCAAACTTGTGAAGAAAGccattattgtaatttatgcGGGTATAAATGTTCCCAGGATAGTGCGCTAGTGAGGCACATGAGAACGCACACTGGCGAAAAGCCATTTTCCTGTAAGATGTGCGAGTATAAATGCGCGCACAAAAACAGTTTAGTGCTGCACATGCTTGCACATAATGGCGTCAAGCCATATTCATGTGAAATATGCAAATATCAGTGCTCACAAACAAGTGCACTGGTTTCGCACAGGAGAACGCACACCGGCGAAAAGCCCTATTCTTGTGAGTTATGCGAGTACAAATGCGCGCACAACAGTAGCCTGGTGTTGCACACGCTCGCACACACTGGCGAGAAGCCATATTCCTGCACGGTATGCGACTATAAATGTGCACAGAATAAATACTTAGTACAGCACATGAGAAAACACACGGGCGAAAAACCCTACTCTTGTAAATTGTGCGACTACAAATGTGCGTACAGTAGTAGCCTGGTATTGCACATGGTATCGCACACCAGTGAAAAGCCATACTCGTGCAAGCTATGCGACTATAAATGTGCTCTGAATAAAAATCTAGTCGCGCATTTACGGACTCATACAGGCGAAAGGCCACATTCGTGCATGTTGTGCGAGTATAAATGCGCGCAAAAAAGTGATTTGGTGAAGCATATGAGAACTCACACCGGCGAAAAGCCTTATTCGTGCCAGTTGTGCGAGTATAAAAGTGCTAGGAATACTCACCTGCAGCAGCACATGAGAACGCACACTGGTGAAAAGCCTTTTTCATGCAAGTTGTGCGAGTATAAATGCGCTAGGAATACTCATCTGCGACAGCACATGAGAAAACATACTAATGAAAAGTCTAATTTGTGCTAG
Protein Sequence: MWVDDAYKECSMSHNPVKLEGSLSYDAVCISVKIEPDASSTVQVDVKYPLKYESATFGCTICFQEFSHEHDYNAHMSVHLQLADCEASRTYQPRTTASSGCQPSHFSEHKYAVQKLYDSRPSADLAQTLVANPHARLATNNELPLTEETDRSKKRKLVHEINELGIKTNTTVNKLTKRVKIDRKFVESRKSISTCDNHYVTGSKDSHSGNKATEDRSSKTKTSLEATECTLYGINVRSTEGICFKCDFCQKTFKRKSLLVEHIKSHKLCQDISGSNLEQMKTQTCEESHYCNLCGYKCSQDSALVRHMRTHTGEKPFSCKMCEYKCAHKNSLVLHMLAHNGVKPYSCEICKYQCSQTSALVSHRRTHTGEKPYSCELCEYKCAHNSSLVLHTLAHTGEKPYSCTVCDYKCAQNKYLVQHMRKHTGEKPYSCKLCDYKCAYSSSLVLHMVSHTSEKPYSCKLCDYKCALNKNLVAHLRTHTGERPHSCMLCEYKCAQKSDLVKHMRTHTGEKPYSCQLCEYKSARNTHLQQHMRTHTGEKPFSCKLCEYKCARNTHLRQHMRKHTNEKSNLC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -