Paeg002499.1
Basic Information
- Insect
- Pararge aegeria
- Gene Symbol
- -
- Assembly
- GCA_905163445.1
- Location
- NC:7038598-7040421[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 6.4 2.6e+02 2.0 2.0 1 23 43 66 43 66 0.91 2 15 0.035 1.4 9.1 0.0 2 23 93 114 92 114 0.94 3 15 0.00059 0.024 14.7 2.9 1 23 136 158 136 158 0.97 4 15 0.0014 0.056 13.5 0.1 1 23 162 184 162 184 0.96 5 15 0.0034 0.14 12.3 5.3 1 23 189 212 189 212 0.96 6 15 0.011 0.47 10.6 3.1 1 23 286 309 286 309 0.96 7 15 0.011 0.43 10.7 0.2 3 23 337 357 336 357 0.97 8 15 0.017 0.68 10.1 0.4 2 23 382 403 381 403 0.97 9 15 0.0063 0.26 11.4 0.2 1 21 407 427 407 429 0.94 10 15 0.0024 0.1 12.7 1.6 1 23 434 457 434 457 0.93 11 15 0.019 0.77 9.9 2.8 2 22 465 485 464 485 0.95 12 15 1.2e-05 0.00048 20.0 0.8 2 23 495 517 494 517 0.96 13 15 3.2e-06 0.00013 21.8 2.4 1 23 523 545 523 545 0.99 14 15 0.0013 0.054 13.6 0.6 1 23 551 573 551 573 0.97 15 15 1e-05 0.00042 20.2 2.2 1 23 579 602 579 602 0.98
Sequence Information
- Coding Sequence
- ATGGAAGATAATAATTCTAATCAAAATAAAACCATTACGTCAGAAATggaaaaacacaaaaacaataTCATAGTCATATTACAAAACACGAATGCAACACCTTTCCAAAGACACAGTGATATTGCATTTGCTTGTTGCTTTTGCAAGAACCAGTACTTAAATCCAAAAGAGTTGAAAGCACACACACTCAATGACCATAATGAAAgtgaaattaaagaaatttgtaaaagaaaaaatttgcGGTACTATCTAATGAAGTTGGATGTAACAGACTTAGTTTGCAACATCTGTAATGAAGGAATAAGTACCCCCCAAGGATTGTTTGAGCACCTGGAGGGTCATGGCAAAAAGATATACACGGATATGGGCAGCAGAATTATACCATTCAGATTCAATACCGAAAAACATGAATGTGCGATTTGCTCAGAGGTTTtttgcaaatttaaaaatttacgcGAACATCTGAATATCCACTTCAAAAATTATGTTTGTAAATTCTGCGACACTGGTTTTATTACTTTGGGATTGCTAGCTTCGCATGAAGCAAGCCATAATTTTGGTACGTTCCAGTGTGATTATTGCGATAAAAGATTCTATACGTGCAAGAGCAAAAAGATACACGAGAGATTATTACATAGAGACAAAATTGAAGAGAAACTAATGACGCAAGACGAAGATAACGACAAAGAAAGCGATAATAAAGCAATAGACCAAGCAAAGGTAGAAGCAGATTCTTCAGCTAATTTAGGAGTTATAAGACTTCACAAGatggaaaaagaaaaacatcatgATAATATCCTTGTGGTTTTGGAGAATACAAACGCAACGCCTTTCGGAAAATGTACCGACACCGGATACGACTGCTTATTATGCACACAAAAATTTTTCCACCCTAAAGATTTAAAGGAGCACAAATTAACAACTCATACCACCGATGAATTCTTAAGCCTGTGTAAACAAGAACGTTTACGCTCTTACATTGTAAAACTAGATATAACTGGCTTATTATGCAAAATTTGTAATAATCGAGTCGAATCTTGGGACAATTTGTTCGAGCATTTGGAGAATCACGGCAAATTTATCCACAGGGATATAAACAACCACATAATACcattcgtattcgatagcgatAACCCATTGCAAGTCTGTGCCATTTGCGCGATCGCCTTCCACAAGGTCAAACTTCTCCGTGAGCATATGAATACTCATTTCCCCAACTACATTTGCGATGTCTGCAACGCTGCTTTCATCACAGAAAGGATGCTAAGCGCGCACATACAATGCCATAAAACCGGAGTTTTCAAATGCGGCTTGTGCGAAAAGAGCTTCAAAACTTACAGGAGCAGACGGGCCCACGAATACATGGTCCACGTTAAGTCGAACCACGCAAGCAGATGTGGCTTCTGTAAGAAAACGTTCAAGTCATACGCACATAAGACCGAACACCTAAAAACCGTTCCCGGCGTCATTCTGAACGAACTCAGATGTTCAGTCTGTGACCGGACTTTCAAAAGCCAACCTCTGTTGACTACGCATGTCAAGAGAGATCATTTGATGGAACGCCATTACAAGTGTAACGAATGCGAAAAGACGttcttcaataaaatttatttaaaaagtcacATGGTGACGCACACTGGGATAAGAAATTTTGAATGCGAGGTGTGCAAGAAAACTTTCGCGTGGAGTAAAATTCTGAAGAAACATATGCGTGCTCACATGGACGATCGATCGTTTAAATGCAATCGATGCGAGAAGGCTTTTGTCCAGAAACTCAATTGGCAGAATCATATGCGGAAGAAGCATAACGAGGAAGTTAGTTAA
- Protein Sequence
- MEDNNSNQNKTITSEMEKHKNNIIVILQNTNATPFQRHSDIAFACCFCKNQYLNPKELKAHTLNDHNESEIKEICKRKNLRYYLMKLDVTDLVCNICNEGISTPQGLFEHLEGHGKKIYTDMGSRIIPFRFNTEKHECAICSEVFCKFKNLREHLNIHFKNYVCKFCDTGFITLGLLASHEASHNFGTFQCDYCDKRFYTCKSKKIHERLLHRDKIEEKLMTQDEDNDKESDNKAIDQAKVEADSSANLGVIRLHKMEKEKHHDNILVVLENTNATPFGKCTDTGYDCLLCTQKFFHPKDLKEHKLTTHTTDEFLSLCKQERLRSYIVKLDITGLLCKICNNRVESWDNLFEHLENHGKFIHRDINNHIIPFVFDSDNPLQVCAICAIAFHKVKLLREHMNTHFPNYICDVCNAAFITERMLSAHIQCHKTGVFKCGLCEKSFKTYRSRRAHEYMVHVKSNHASRCGFCKKTFKSYAHKTEHLKTVPGVILNELRCSVCDRTFKSQPLLTTHVKRDHLMERHYKCNECEKTFFNKIYLKSHMVTHTGIRNFECEVCKKTFAWSKILKKHMRAHMDDRSFKCNRCEKAFVQKLNWQNHMRKKHNEEVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -