Basic Information

Insect: Pararge aegeria
Gene Symbol: -
Assembly: GCA_905163445.1
Location: NC:9416815-9424430[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0037 0.15 12.2 1.3 3 23 78 98 76 98 0.97

2 14 0.00073 0.03 14.4 1.4 1 23 283 305 283 305 0.98

3 14 0.00029 0.012 15.6 6.2 3 23 313 333 311 333 0.96

4 14 0.094 3.9 7.7 0.6 1 23 339 361 339 361 0.98

5 14 0.00027 0.011 15.7 0.8 1 23 367 389 367 389 0.98

6 14 0.00011 0.0044 17.0 3.2 1 23 395 417 395 417 0.97

7 14 0.042 1.7 8.8 3.7 1 23 423 445 423 445 0.98

8 14 0.00015 0.0061 16.6 5.0 1 23 451 473 451 473 0.99

9 14 1.1e-06 4.3e-05 23.3 3.8 1 23 479 501 479 501 0.99

10 14 1.9e-05 0.00078 19.4 1.7 1 23 507 529 507 529 0.99

11 14 4e-05 0.0016 18.4 1.9 1 23 535 557 535 557 0.98

12 14 0.00082 0.033 14.2 7.5 1 23 563 585 563 585 0.98

13 14 0.00017 0.0071 16.3 4.6 1 23 591 613 591 613 0.98

14 14 5.7e-05 0.0023 17.9 5.2 1 23 619 641 619 641 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0037	0.15	12.2	1.3	3	23	78	98	76	98	0.97
2	14	0.00073	0.03	14.4	1.4	1	23	283	305	283	305	0.98
3	14	0.00029	0.012	15.6	6.2	3	23	313	333	311	333	0.96
4	14	0.094	3.9	7.7	0.6	1	23	339	361	339	361	0.98
5	14	0.00027	0.011	15.7	0.8	1	23	367	389	367	389	0.98
6	14	0.00011	0.0044	17.0	3.2	1	23	395	417	395	417	0.97
7	14	0.042	1.7	8.8	3.7	1	23	423	445	423	445	0.98
8	14	0.00015	0.0061	16.6	5.0	1	23	451	473	451	473	0.99
9	14	1.1e-06	4.3e-05	23.3	3.8	1	23	479	501	479	501	0.99
10	14	1.9e-05	0.00078	19.4	1.7	1	23	507	529	507	529	0.99
11	14	4e-05	0.0016	18.4	1.9	1	23	535	557	535	557	0.98
12	14	0.00082	0.033	14.2	7.5	1	23	563	585	563	585	0.98
13	14	0.00017	0.0071	16.3	4.6	1	23	591	613	591	613	0.98
14	14	5.7e-05	0.0023	17.9	5.2	1	23	619	641	619	641	0.98

Sequence Information

Coding Sequence: ATGGACGTGATAACCGAAGATGATATTCCATTGGACAACATCAGCAATGTCTTTATTGATTCTACAAACGAATACTCGATGTCTGATAATAGCTTACTGATGGATGTTCATTTACTAGATAATTCAATATACAAAGATCTCCAGATCGAAGCTGAAGCTTCCAACTCTGAATTGGATGAACAAGCATATGGAATACAGCCCCCGTTGAAATATGGAAGTGTCAATTTTGGATGCTCGCTATGTTTCAAGGAATTTGCCAATGAACATGAGTACAATGAACATATGACGATGCATCTCCAGGCTGTGGCTAGTGATAGCGACTGCGAGACATTAGAAGCATGCGAGCCTTGTACATTTGCAAGGTCTGGTTGCGACTCTGCACACATCACAGAGCAAGAGCGTGCAGTTCAGAAGCTGGATGACTACTTCACCATCCTCCCATCTTCAGACTTAACTCAAAATATAGtcGCTGTTCCTCTGTTTGCGAGTCTAAATAACGAAATGGAAGTGTTGCCAACTGAAGAAGCTGACACGATAGATAATAATGAACAACTACTTGTAATCGACGACGGTGAGTTAGCGAACCAACCAATCGATAGCAGCATCAAAATGAACGCAGACATCAATGCTGCATTCAATAATTGTGTCGAATTATATGTTATCAAAGATCTTGCACAAACGAAAACACCTTGTGATACCCCAAATGTTGATATTGCCCCCAAAGATTTGCACTGTCAGTCATTAAGCGGAAACGAATTTTCTTCAGCGGAAAGCACGCAATTACAGACTTGTGAAAATAAAAGAGATACAGGTAAGAATACGAAAAAAAACCGGGCTGTAAAGTGTTATTCTTGCAAGTTGTGCGAGTTTGAGTGTCCGAAAAATGGAGATTTAGTGAGGCACATGAGCACTCACACCACTGAAAAATCTATTTGTTGCCAATTATGCGATTATAAATGTGCCAAAAAGAGCAATTTATCGAGACACATGAAGACTCACTCCGATGACAATTCTTATTCTTGTGATTTGTGCGAGTTCCAAAGCGCCAAAAGCAAAGCTCTAGTTTTGCACAAGAAAACGCACAAAAAAGTCAAAACCTTTCCATGTAAATTGTGCGACTATAAAGGTGAAAATAAGAACTCTTTACTGTCTCATATGAAAACCCACGCGGACGATAAACCTTTTTCTTGTAACTTATGCGACTACAAATGCACACGCAACAGTGATTTGTTGAGACACGCGCTAAAGCACGGTAGCAACAAATCTTTTTCCTGCAACTTCTGCGAGTTTAGATGTGCACAGAACTACATACTATTGAGGCACCTGAGAACTCATAAAGGCGAAAAGTCGTACACATGTGAACTATGCGAGTACAAATGTACGCAGAATTACAAACTTTCGAGGCACCTGAGAACGCACACTGGTGAAAAGCCTTATTCTTGCAAACTGTGCGACTACAAATGCGCGGACAACAGTAACCTAACGAGGCATATGAAAACCCACAATAGTAAAAAACCGTATTCCTGTAAACTATGCAAATACAGATTTGCGGCCAACAGTTACCTCATAACGCACATGAAAACGCACACTGCTGAAAAGCCTTTCTCCTGTGAGCTATGCAAGTATAAAAGTTCTTCAAACAGCTACTTGGTATCACACATGAGAACGCACACCGGAGAGAAGCCTTATTCTTGTCATTTATGCGACTACAAATGTGCACACAAAAGCACACTGACGCTTCACATTAAATCGCACACGGGTGAAAAGCCTTTTTCATGTCTGCTGTGCAAGTATAAATGTTCTACGAACAGTTATTTAGTCTCGCACATGAGAACACACACGGGTGAGAAACCTTTTTCTTGTAAGCTATGTGATTATAAGTGTGCGCATAATAGCACGCTAGCGTCACACATGAGAACTCACGACGGGGACAAGCCACAAATgtaa
Protein Sequence: MDVITEDDIPLDNISNVFIDSTNEYSMSDNSLLMDVHLLDNSIYKDLQIEAEASNSELDEQAYGIQPPLKYGSVNFGCSLCFKEFANEHEYNEHMTMHLQAVASDSDCETLEACEPCTFARSGCDSAHITEQERAVQKLDDYFTILPSSDLTQNIVAVPLFASLNNEMEVLPTEEADTIDNNEQLLVIDDGELANQPIDSSIKMNADINAAFNNCVELYVIKDLAQTKTPCDTPNVDIAPKDLHCQSLSGNEFSSAESTQLQTCENKRDTGKNTKKNRAVKCYSCKLCEFECPKNGDLVRHMSTHTTEKSICCQLCDYKCAKKSNLSRHMKTHSDDNSYSCDLCEFQSAKSKALVLHKKTHKKVKTFPCKLCDYKGENKNSLLSHMKTHADDKPFSCNLCDYKCTRNSDLLRHALKHGSNKSFSCNFCEFRCAQNYILLRHLRTHKGEKSYTCELCEYKCTQNYKLSRHLRTHTGEKPYSCKLCDYKCADNSNLTRHMKTHNSKKPYSCKLCKYRFAANSYLITHMKTHTAEKPFSCELCKYKSSSNSYLVSHMRTHTGEKPYSCHLCDYKCAHKSTLTLHIKSHTGEKPFSCLLCKYKCSTNSYLVSHMRTHTGEKPFSCKLCDYKCAHNSTLASHMRTHDGDKPQM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -