Paeg008801.1
Basic Information
- Insect
- Pararge aegeria
- Gene Symbol
- -
- Assembly
- GCA_905163445.1
- Location
- NC:13062333-13076445[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 9.7e-06 0.0004 20.3 0.1 1 23 160 183 160 183 0.94 2 10 0.00015 0.0063 16.5 2.3 2 23 189 210 188 210 0.97 3 10 2.1e-08 8.7e-07 28.6 2.1 1 23 216 238 216 238 0.99 4 10 0.00021 0.0085 16.1 0.3 1 20 244 263 244 265 0.96 5 10 3.8e-05 0.0016 18.4 0.9 2 23 277 298 276 298 0.97 6 10 2.2e-05 0.00088 19.2 4.2 1 23 304 326 304 326 0.97 7 10 0.00024 0.0097 15.9 3.5 1 23 332 354 332 354 0.98 8 10 0.00025 0.01 15.8 4.1 1 23 360 382 360 382 0.96 9 10 1.6e-05 0.00067 19.6 0.2 2 23 389 410 388 410 0.97 10 10 6e-05 0.0024 17.8 1.6 1 23 416 439 416 439 0.94
Sequence Information
- Coding Sequence
- ATGGAGAAAGATCTAGTGTGCATTAAAATTAAGGTAGAGCCCGATGACAGTGGGCCAGATATTTTACCTTCCATAGCGGATCATAATATAGGAGCCtctaatgataataaaaaacaaaatgatatGAATGACCAAAGCTTGCGAGACGACGACCGAAAGTGTCTGATTGAGCCGGAGTTCGTCAGCGTTAAGAAAGAACCGGGCTCGACTGTTGACACcGTTAATTCAAAGGCAAAGACAAATACAGACACAGCAAGCTGGCATAATGTACCAGTCAAATATGAACCTGGATGCCAAAATATAAATGTAGAAATATCTATCAAGGAAGAACCAACTGATGTAGAAGTGCAAATTgaacCATATTACCCTGATTATATTGTGCCAGACACAGCACCGCAGATACCAAAACCATGCAACCTGTTTATAAGTGATTTTTCCGACAAAATTCTCGACTTGAGCTCGACTGTTGACGGGAAATACATGTGCCCAATATGCCAGAAGAGATTCGCAAATAAAGGTAACGTTAGCCGGCACGTACTCGAAGCGCACACGCGGGAAAAACTCGAATGCAATGTATGCTTCAGAAAATTCGTCAAACAGGGCCATTACGAGAAGCATTTACTCACGCATTCTACGGAAAAACGTTTCAAATGCGAGGAATGCGACAAAAGGTTTCGCACCTCCTCGAACTTGGAGCAGCATAAGCGCATACATCTACTAGTGAAACCTTTCCAATGTCAAAAATGCACGAGACAGTTCGCCGTCAAAGCGAACCTCGCGAAACACCAGGGCTCTGGCAGGTGTAAATTACCAAACGTCGATCCAATTGTTTGCAACGTCTGCAACAAGGTATTCCAAAAAGAGTTCCTATTAAAAAGCCATTTACGGAGACACACCACAGAGCGCCCGTACGAATGTGACAAATGCAAAATGTGTTTCAAATACAAATCTACACTAATACGCCACGTTcaactacataataatatcaaaccGTACTCATGTACTATATGCAAGAAAAAGTTCACACATTCAGGTCTGATAAAGCCACATATGAGAAAACACACCGGGGAGAAGCCGTACGCATGTCCGATGTGCAACAAACTTTTCGCCCACAAACACAATATGCAAAGGCATTCGTTGAGGCACgcgaaaattaaaaacttagttTGCGCGGTCTGCAACAAAGTTTTCCCTAAAGAGAGTCGGTTGATTTATCATATGAGAACTCATACTAAAGCCAAGCCATTCGTTTGTGCGGTTTGCGGTAAAACTTTTTCACATAGACAAAATATAGTTAGACATTATGGTAGGAAGCATCCGAACGATAGATACGAATGCACTGATACTGACGCAAGTGTTGCCAAACACGTGTGGGAGAATGTGGTGTTGAAGAATAATATGAATGTTAGTGATGACGTCAAACATGTCGTCAGTAGCGACGACGAATTGTTGTCGAACTTTATAACTGAAGAAATTatagggaaataa
- Protein Sequence
- MEKDLVCIKIKVEPDDSGPDILPSIADHNIGASNDNKKQNDMNDQSLRDDDRKCLIEPEFVSVKKEPGSTVDTVNSKAKTNTDTASWHNVPVKYEPGCQNINVEISIKEEPTDVEVQIEPYYPDYIVPDTAPQIPKPCNLFISDFSDKILDLSSTVDGKYMCPICQKRFANKGNVSRHVLEAHTREKLECNVCFRKFVKQGHYEKHLLTHSTEKRFKCEECDKRFRTSSNLEQHKRIHLLVKPFQCQKCTRQFAVKANLAKHQGSGRCKLPNVDPIVCNVCNKVFQKEFLLKSHLRRHTTERPYECDKCKMCFKYKSTLIRHVQLHNNIKPYSCTICKKKFTHSGLIKPHMRKHTGEKPYACPMCNKLFAHKHNMQRHSLRHAKIKNLVCAVCNKVFPKESRLIYHMRTHTKAKPFVCAVCGKTFSHRQNIVRHYGRKHPNDRYECTDTDASVAKHVWENVVLKNNMNVSDDVKHVVSSDDELLSNFITEEIIGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -