Basic Information

Insect: Pararge aegeria
Gene Symbol: -
Assembly: GCA_905163445.1
Location: NC:13823050-13827989[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0011 0.047 13.8 4.1 2 23 152 173 151 173 0.95

2 12 0.0016 0.067 13.3 4.7 2 23 240 261 239 261 0.96

3 12 5.2e-05 0.0021 18.0 1.7 1 23 292 314 292 314 0.99

4 12 1.9e-05 0.00078 19.4 2.7 2 23 322 343 321 343 0.91

5 12 2e-05 0.00081 19.3 0.1 1 23 349 371 349 371 0.99

6 12 1.1e-06 4.4e-05 23.3 0.8 3 23 379 399 378 399 0.99

7 12 1.2e-06 4.9e-05 23.1 0.9 1 23 405 427 405 427 0.95

8 12 6.3e-06 0.00026 20.9 0.4 1 23 433 455 433 455 0.97

9 12 8.1e-06 0.00033 20.5 1.7 1 23 461 483 461 483 0.98

10 12 0.021 0.87 9.8 6.7 1 23 489 511 489 511 0.99

11 12 3.2e-07 1.3e-05 24.9 1.2 1 23 517 539 517 539 0.99

12 12 2.6e-05 0.0011 18.9 0.4 1 23 545 567 545 567 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0011	0.047	13.8	4.1	2	23	152	173	151	173	0.95
2	12	0.0016	0.067	13.3	4.7	2	23	240	261	239	261	0.96
3	12	5.2e-05	0.0021	18.0	1.7	1	23	292	314	292	314	0.99
4	12	1.9e-05	0.00078	19.4	2.7	2	23	322	343	321	343	0.91
5	12	2e-05	0.00081	19.3	0.1	1	23	349	371	349	371	0.99
6	12	1.1e-06	4.4e-05	23.3	0.8	3	23	379	399	378	399	0.99
7	12	1.2e-06	4.9e-05	23.1	0.9	1	23	405	427	405	427	0.95
8	12	6.3e-06	0.00026	20.9	0.4	1	23	433	455	433	455	0.97
9	12	8.1e-06	0.00033	20.5	1.7	1	23	461	483	461	483	0.98
10	12	0.021	0.87	9.8	6.7	1	23	489	511	489	511	0.99
11	12	3.2e-07	1.3e-05	24.9	1.2	1	23	517	539	517	539	0.99
12	12	2.6e-05	0.0011	18.9	0.4	1	23	545	567	545	567	0.97

Sequence Information

Coding Sequence: ATGGCTTCCGAGACTAAGATAAAATGTTGTCGCACTTGTTTGAAAGAAGATTCTTTGATGTTTGATCTTTTCTTAGAGAGGTTAGAATCTTCAAACTTAGCGGATATGCTTGTATCTTGCActaaattaaaaatCCGAGAAGATGATTCCCTCCCAAAACAAATATGTAGATATTGCTATAATTGCCTTGTATCTTTTTCTCACTTTTGCAATATGGCACAGAAGGCTGAAGATAAACTTAAGGAAGCAATGTTAAATAGCGAAGGATTCAATCATAATTCTGAAGGTGAtacatttgaaattaaaatagaaaataatattcacGATGACATATTTGACACTCATGAAGGAAATTATGATAACCATTTGAATttagatgaaaataaaaattcagaaaCTTGTAATTCAAATAACGATTGTAAAGTTAGCAAGGATAAAGCAGAgagtaaattaaattgtttgtaTTGTAATAAACATTTCAGTAAACTCTCTAAGTTGAAAAATCATGAAGAAAagcattttaataaaagtagatGTAGCATAGTGTCAAAACACAATGATAACGCAGTGCCATTCAATGGTGGAAATCCagatttaaatgttaaaagtgATTCAACAAATACAGATTTGATATGTATTATTTGTTCTTCCAGATTTGAATCAATGAATTTGTGTTCAGCTCATATGAAAAgccatgaagaaaaaaattgggAAATATCCTGTGACCAATGCagcaaagtatttaaaaaagttaatcaTTTAAAACATCACAAAATGATCCACAATGATACATGCTCCCATATTGATTTGTTGCATACAATGACACCTAAGGAAAATGTGAATACAAATATATGTGGATCTAATTCGGATCAGTTTCAATGCAGCAAATGTTTGTTGACATTTAAGAATATTAATTCACTATCGGCTCATATGAGGAAGCATACCGAAAAAGGAAGAGTCATATCTTGCAAAGAATGCAATAAGGTTTTTAAAAAGCTCAGTCATTTAAAACGACACGAGGTACAACATGAAATTAACTGCCCATACAAATGTACAGTTTGTCCAAAATCTTTACCAACGGAAGATGCATTAAGAGATCACTTAAATAAACACAGAGGGGTTAAACCTCACGGATGTCCAGTTTGTGGGAAGAAATTCTCCCATTTATCAACTTTAACGGTGCATCTAAAGATACACACTCGTGATAAATCGTTCTTGTGTCCAACTTGTGGTAAAAAGTTTGACTCCAGTACTAATTTGAATCAGCATATATCAAGGCATATTGGATTGAAGGAGTTTGCTTGCACATTGTGTCCTAAAAGATTTGTTAGTAAAGgTGAGCTAAAATCGCATACAATAACGCACACAGGCGAGCGTTCGTACACATGTGATCAATGTGGTGCGACGTTTACCAAACGCAGTTCACTGTCGAAGCACAAAATACGACATCTGGGACTCAAACCGTACCAGTGTGCTACATGCTTAATGAGATTCACATGCAAGGACCATTTGAAAAGGCATTACCGCATTCACACTGGCGAGAAACCGTACAAATGCGACATGTGTGATAGGGCCTTTACCCAGAGCAACGACCTCGTCAAACATCGTCGCTCTCATGTAGGAGAAAAAGTGTataaATGCCCCCAATGTACCGAGAGTTTCCGCCTCAACGTCGAGCTGCGTCAACACATTTCGGAGCACTTTATCTCCTTACAAAGTTCTTTTGCCGTCGGTTCTTGTCCAGTTGACGGAGTTCAGTCGGGGGGTACAGGCCTCGAGGCTAAGCCCCCTTGTCCAGATGTGACCTCACAAGTTGTGTAG
Protein Sequence: MASETKIKCCRTCLKEDSLMFDLFLERLESSNLADMLVSCTKLKIREDDSLPKQICRYCYNCLVSFSHFCNMAQKAEDKLKEAMLNSEGFNHNSEGDTFEIKIENNIHDDIFDTHEGNYDNHLNLDENKNSETCNSNNDCKVSKDKAESKLNCLYCNKHFSKLSKLKNHEEKHFNKSRCSIVSKHNDNAVPFNGGNPDLNVKSDSTNTDLICIICSSRFESMNLCSAHMKSHEEKNWEISCDQCSKVFKKVNHLKHHKMIHNDTCSHIDLLHTMTPKENVNTNICGSNSDQFQCSKCLLTFKNINSLSAHMRKHTEKGRVISCKECNKVFKKLSHLKRHEVQHEINCPYKCTVCPKSLPTEDALRDHLNKHRGVKPHGCPVCGKKFSHLSTLTVHLKIHTRDKSFLCPTCGKKFDSSTNLNQHISRHIGLKEFACTLCPKRFVSKGELKSHTITHTGERSYTCDQCGATFTKRSSLSKHKIRHLGLKPYQCATCLMRFTCKDHLKRHYRIHTGEKPYKCDMCDRAFTQSNDLVKHRRSHVGEKVYKCPQCTESFRLNVELRQHISEHFISLQSSFAVGSCPVDGVQSGGTGLEAKPPCPDVTSQVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -