Paeg002785.1
Basic Information
- Insect
- Pararge aegeria
- Gene Symbol
- -
- Assembly
- GCA_905163445.1
- Location
- NC:6888672-6909408[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.021 0.86 9.8 0.0 2 23 244 266 243 266 0.94 2 24 0.00033 0.013 15.5 3.3 1 23 336 358 336 358 0.97 3 24 0.39 16 5.8 0.8 1 10 362 371 362 373 0.92 4 24 8.4 3.4e+02 1.6 0.2 3 23 408 429 406 429 0.86 5 24 2.8 1.1e+02 3.1 0.0 3 23 458 479 456 479 0.89 6 24 3.7 1.5e+02 2.7 0.3 2 20 502 520 501 523 0.92 7 24 2.3e-07 9.4e-06 25.4 0.7 1 23 527 550 527 550 0.97 8 24 2.6 1e+02 3.2 1.2 1 10 582 591 582 605 0.85 9 24 8.4e-05 0.0035 17.3 3.8 1 23 612 635 612 635 0.91 10 24 0.0019 0.079 13.0 0.3 1 23 640 662 640 662 0.95 11 24 8e-05 0.0033 17.4 1.3 1 19 668 686 668 690 0.95 12 24 0.0014 0.056 13.5 4.1 1 23 696 719 696 719 0.96 13 24 0.0065 0.27 11.4 0.0 2 23 779 801 778 801 0.92 14 24 1.5 60 4.0 0.3 2 23 826 848 825 848 0.91 15 24 0.47 19 5.6 0.8 2 23 920 942 919 942 0.93 16 24 0.76 31 4.9 0.1 2 23 968 990 967 990 0.92 17 24 0.022 0.91 9.7 1.9 3 23 1014 1034 1013 1034 0.98 18 24 5.5e-07 2.3e-05 24.2 1.0 1 23 1038 1061 1038 1061 0.96 19 24 3 1.2e+02 3.0 0.2 3 19 1068 1084 1067 1086 0.87 20 24 0.013 0.55 10.4 0.4 1 23 1094 1117 1094 1117 0.98 21 24 0.00038 0.016 15.3 1.7 1 23 1124 1147 1124 1147 0.95 22 24 6.9e-05 0.0028 17.6 1.3 1 23 1152 1174 1152 1174 0.96 23 24 2.9e-05 0.0012 18.8 0.2 1 20 1180 1199 1180 1202 0.93 24 24 0.0001 0.0042 17.0 4.0 1 23 1208 1230 1208 1231 0.95
Sequence Information
- Coding Sequence
- ATGGCAGCGAAAACTTCGGAATGGCGTCCCGGTCCGACTGTATGTCGATGTTGCCTCTCGGAAGGCTGTTACAAGGACATTTCAACTGAATATTTCTGGATGGGCAAGCGGGAAGTGTACTCCGAGATGTTATCAGAGACTTTGGATTTAACTATATCATACTCCAAGTCGGGAGGACCGAACAGCCAGAGTCGTCTAATATGCGAGCCATGCATCGCTAGGCTGCGCGACGCTTCTGACTTCAAGCGCCAAGTCCAAGAGTGCGAGAAGACCTTTGTACAGTGCCTCGACCCTGCCACCGCACTAAATGACCTACAAGTAAGCCTAGAACTGGACAAGGAGGTGAAGGTGGAATTGGTTATGAAGGAGGAGAAGCGTCTGAGCGATGACGACTTTGACGACGCGCCCGATTTCGGCGATGACGACGACTATGATGACCTTGACGACCAGCCATTGACTAAACTAGCGAGTAAAATACCCAAAAAGGAGGAAGTCGATGTGCTCGATTTACTCGACAACGCGAAAATAACTGAGAAGAGGAAATCCTCGTCGAAAATTAAGTCGCAGCCGTCCAAAAAGGCGAAAACCAAGCAGATCGCCAGCTCGAGCAAGGAGAAACCGGAGCCGAAGAAGAAAAAAGaggAGTGGTCCGACCCAGCGCGGGAAAACGCCGGTACGATCATAAAATGTACGACCGCCTACCCCTTCCGGGTGAACGATAAGTGCATAGTCTGCGTCTACTGCCAGGAACTCTACGAGGACCCTGACATGTTCAGGAAGCATATGGATGTGGAACATGAACAGTTCAACGAGAAAGTAGCGTTCTACAACCTCCCCAAACTAGAATTCATAAAAGCAGATCTCACTAATCTGACTTGCAGACTATGCATGCAGCAGTTCGAAACCCTTGAAATTATCGCGGACCACCTGAAAATTATACACGGACAAGCTATAGACTTAAACGCGAGACTCGGTGTCATGCCTTACGTTCTACGCAAAGACGTCTTCAATTGCGTCGTATGCGGAAAGAGTTGCCCATCTCTCTTCCACCTGAATCGCCACACAATAACTCATTTCCTGAGCTACGTATGCCATTTTTGCGGCAAAAGTTACGTTGCGACGACTGTTGTGGATTGGTTAATCACGGCGCGTCACAACGCTAAGGTAGTTTTGAAATGCACGACAATGTATCCGTTTAGGATACCCAGTAATACCATGGTATGCGTGTACTGCTGCGAGCAAATCGAGGACCCGGCCGATTACCGGCAGCACATGAAGGAGGAGCACAAAACCTTCAACGTGGATACCGCGTTCGCCCACACACCGAATAACTACACGGAGTTCCTGAAAGTGGACTGTAGCGAGCTGGCGTGCAGGATCTGCGACCAGCCGTACGACAACATACCCCTGATCGCTCGACACATTGCCGAGGATCACGGCAAAGACGTGAACCTGGACGTCGAGGTGGGCATGCAGATGTTCAAGCTCGGCCCGGAGAAATGGGTGTGCGCGCTGTGCGGTATCAAACTGCCGAGCATCCGCGAGCTGAGCCGGCACACGAGTTGCCACTACCACAAGTACACTTGCGAGACCTGCGGCAAGTCCTACATCAACAAGGAGAACCTGCAGCGCCATATACAGTACGTGCACAGCGATTACAAGCTCTGCATTAAGTGCAAGAGGAACTTTGTGTCGGTGCAGGAGCGTCGCAAGCACGTCGTCGACTCTCCCAAATGCTGGCCGTTCTGTTGCCCGCAATGCGGACAGAGGTTCCTGACCAGACGGATCAAGAGCGACCACATGAAAGACGCCCACGGCCAGAGCCCGAAGACTCACACTTGCCCGGATTGCGGGAAAGTTTTCGACAAGTGGCACCACTATAGAGCACATTTCATACTGTCTCATACGAACGACACGTTCGCATGCTCCTTTTGTAACCTCAAGTTTGACACCAAACGCAATCTCGCGGAGCATGTGGTCATACACACGAAAGAGAAGTCGTTCCCTTGTACGGTTTGCTCCAAAACGTTCTCGAGGAAGAAGAATCTATCGCAGCACAGTTGGGTGCACAGCGAGTATAAGCGTTTCGAATGCAACCTCTGCAACAGGCAGTTCAACCAGCGAGTCAGCTGGAAGACTCACATGAAACACTACCACCCTGAGTTGGAATTGCGGAGTAACAATAATTTGGTTTGGAAACGAACAACTGAATGACCCAGGGCATTTCTTTTTGTTCTAGACAAAAGTGATGCGTATTACATGGCGCGGCGCAACGCGGAGTATATCGTGAAATTAACCACAGCGTACCCATTCAGGCTTCCAGAAGATTCCATGGTTTGTGTGTACTGCGGCGAGAGTTACGATGACCCCTTGATGTACAGAAAGCACATGGACGAAGAGCACCAGACGTTCAATGTGCGAATGGCTTTCGTGCACTGTCACGAGGGCTTCATCAAAGTGGACTGTACGGATCTACAGTGTCGGCTGTGCGCCGAACCGTTCGAAACGCTGGACGACGTAGCGCAACATCTGTACCATAAACACGAACAACCGGTCGACCTCTCGTTCGAACTCGGCATGCAACCGTTCAAACTAGGGAAGGACAAGTTAGTCTGCGCTATCTGTAAAGCGAAGTCCCTCTGCCTCAGACAGTTGAGTCGGCACACGCAATCCCACTTCTTAAAATACACACGCAATGCCGAAGTCATGGTGACATATACGACCGCCTACCCCTTCAGATTGCCAGAGACGTCACTTATGTGCGTATACTGCTGCGAGTCTTACGCCGACTCCGCCAAGTTCCGACAGCATATGGTCTCGGAGCACGATACCTTCAAAGTGGAAACAGCTTTCGCCCACTGTCCATACGAAGGGTACCTCAAAACTGACTGCACTGATCTCCGATGTAGAACGTGTGGAGGGAAGTTCACAAAAATCGAGGACGCCGCGAAACATTTGAACGATGCCCACGACAGAAAAATcaatttcgattttcatttggGTATTCAGCCGTTCAAATTCGAGGGCGAGAAGCTCTTGTGCGGGATCTGCGACAGGAATTTCCCTTGCCTCCGACAACTCAGTCGGCATATGTCAACACACTATCAGAACTTCACCTGTGCGGAGTGCGGGAAGTCCTACACTACGAACGGATCCCTCCAGCAGCATATGAGGTTCACTCATATACCCGATGAGAGAATTTGCAGAAGGTGCAAGCAGACGTTTAGTTCCTTGGAGGCAAAGCGAGAGCATGCGGAGAACTCGCCCAAATGTTGGCCTTACCAGTGCGTCCAATGCGCGCAAAGGTTCATAAAATGGTCGGCTAAGGAGAAGCATTTGACAACAGTGCACGGCCAAGCGACTCGAACTCACTCGTGCCCGGAGTGCAACCAAGTTTTCACATCGAGGAATTCCTACAGAGTCCATTTTGCTACAATGCACGCGGGAGTGAACTTCGTTTGTTCGTGGTGCGGCAGGAAGTTCGGCACGAAGCGTCACCTAGAGCAGCATACAGTTGTACATACGGGAATAAAACTATTCGACTGTACCGTCTGCTCTAAGTCATTTCCGCGTAAAGCTAATTTGGCGCAACACATGTGGATACACAGCGACTACAAGCGTTTCGAATGCAACATGTGCAATAAACAGTTTAACCAGCGCGTCAGTTACAAATCGCACATGAAGGCACATCATCCCGAAATACAAAactattga
- Protein Sequence
- MAAKTSEWRPGPTVCRCCLSEGCYKDISTEYFWMGKREVYSEMLSETLDLTISYSKSGGPNSQSRLICEPCIARLRDASDFKRQVQECEKTFVQCLDPATALNDLQVSLELDKEVKVELVMKEEKRLSDDDFDDAPDFGDDDDYDDLDDQPLTKLASKIPKKEEVDVLDLLDNAKITEKRKSSSKIKSQPSKKAKTKQIASSSKEKPEPKKKKEEWSDPARENAGTIIKCTTAYPFRVNDKCIVCVYCQELYEDPDMFRKHMDVEHEQFNEKVAFYNLPKLEFIKADLTNLTCRLCMQQFETLEIIADHLKIIHGQAIDLNARLGVMPYVLRKDVFNCVVCGKSCPSLFHLNRHTITHFLSYVCHFCGKSYVATTVVDWLITARHNAKVVLKCTTMYPFRIPSNTMVCVYCCEQIEDPADYRQHMKEEHKTFNVDTAFAHTPNNYTEFLKVDCSELACRICDQPYDNIPLIARHIAEDHGKDVNLDVEVGMQMFKLGPEKWVCALCGIKLPSIRELSRHTSCHYHKYTCETCGKSYINKENLQRHIQYVHSDYKLCIKCKRNFVSVQERRKHVVDSPKCWPFCCPQCGQRFLTRRIKSDHMKDAHGQSPKTHTCPDCGKVFDKWHHYRAHFILSHTNDTFACSFCNLKFDTKRNLAEHVVIHTKEKSFPCTVCSKTFSRKKNLSQHSWVHSEYKRFECNLCNRQFNQRVSWKTHMKHYHPELELRSNNNLVWKRTTE*PRAFLFVLDKSDAYYMARRNAEYIVKLTTAYPFRLPEDSMVCVYCGESYDDPLMYRKHMDEEHQTFNVRMAFVHCHEGFIKVDCTDLQCRLCAEPFETLDDVAQHLYHKHEQPVDLSFELGMQPFKLGKDKLVCAICKAKSLCLRQLSRHTQSHFLKYTRNAEVMVTYTTAYPFRLPETSLMCVYCCESYADSAKFRQHMVSEHDTFKVETAFAHCPYEGYLKTDCTDLRCRTCGGKFTKIEDAAKHLNDAHDRKINFDFHLGIQPFKFEGEKLLCGICDRNFPCLRQLSRHMSTHYQNFTCAECGKSYTTNGSLQQHMRFTHIPDERICRRCKQTFSSLEAKREHAENSPKCWPYQCVQCAQRFIKWSAKEKHLTTVHGQATRTHSCPECNQVFTSRNSYRVHFATMHAGVNFVCSWCGRKFGTKRHLEQHTVVHTGIKLFDCTVCSKSFPRKANLAQHMWIHSDYKRFECNMCNKQFNQRVSYKSHMKAHHPEIQNY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -