Basic Information

Insect: Pararge aegeria
Gene Symbol: -
Assembly: GCA_905163445.1
Location: NC:289222-301346[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0024 0.097 12.8 3.0 3 23 135 155 134 155 0.98

2 15 2.7e-05 0.0011 18.9 7.2 1 23 161 183 161 183 0.98

3 15 3.2e-06 0.00013 21.8 2.5 1 23 189 211 189 211 0.98

4 15 8.8e-05 0.0036 17.3 4.2 1 23 217 239 217 239 0.98

5 15 1.2e-06 4.9e-05 23.1 3.6 1 23 245 267 245 267 0.98

6 15 0.85 35 4.7 7.2 1 22 273 291 273 298 0.73

7 15 0.0083 0.34 11.1 5.6 1 23 360 382 360 382 0.98

8 15 3e-05 0.0012 18.7 0.8 1 23 388 410 388 410 0.98

9 15 2.4e-06 9.7e-05 22.2 1.9 1 23 416 438 416 438 0.98

10 15 2.7e-05 0.0011 18.9 4.8 1 23 444 466 444 466 0.97

11 15 0.00023 0.0095 15.9 0.2 1 23 472 494 472 494 0.98

12 15 3.8e-05 0.0015 18.4 2.5 1 23 500 522 500 522 0.98

13 15 0.00023 0.0096 15.9 0.4 1 23 528 550 528 550 0.98

14 15 4.9e-06 0.0002 21.2 1.0 1 23 556 578 556 578 0.98

15 15 2e-07 8.3e-06 25.6 0.9 1 23 584 606 584 606 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0024	0.097	12.8	3.0	3	23	135	155	134	155	0.98
2	15	2.7e-05	0.0011	18.9	7.2	1	23	161	183	161	183	0.98
3	15	3.2e-06	0.00013	21.8	2.5	1	23	189	211	189	211	0.98
4	15	8.8e-05	0.0036	17.3	4.2	1	23	217	239	217	239	0.98
5	15	1.2e-06	4.9e-05	23.1	3.6	1	23	245	267	245	267	0.98
6	15	0.85	35	4.7	7.2	1	22	273	291	273	298	0.73
7	15	0.0083	0.34	11.1	5.6	1	23	360	382	360	382	0.98
8	15	3e-05	0.0012	18.7	0.8	1	23	388	410	388	410	0.98
9	15	2.4e-06	9.7e-05	22.2	1.9	1	23	416	438	416	438	0.98
10	15	2.7e-05	0.0011	18.9	4.8	1	23	444	466	444	466	0.97
11	15	0.00023	0.0095	15.9	0.2	1	23	472	494	472	494	0.98
12	15	3.8e-05	0.0015	18.4	2.5	1	23	500	522	500	522	0.98
13	15	0.00023	0.0096	15.9	0.4	1	23	528	550	528	550	0.98
14	15	4.9e-06	0.0002	21.2	1.0	1	23	556	578	556	578	0.98
15	15	2e-07	8.3e-06	25.6	0.9	1	23	584	606	584	606	0.99

Sequence Information

Coding Sequence: ATGGAGGAACGAGGAAATGTGTCAGCTGATACAAGCTTCCTCATTATACCCAAAACGGAAATTGGAGAAGAATTAGAGATCACGTTTGAAAATGACTGTATAGacaataaagactttataaTACCAAAAAAGGAATTCTCCGGCTCGAGTCAACACTCTGATGATGAATATCTGAATAAACCAATAGAACTGTTAATGCCAATCAAGAAGGAAATATTTGAAGAAGATGAGTCAACCGACTGCACAGATACTATATTGGATGTGCCTAACCATGTCACATTACAAATTGAAtttgaGCCCGAAGCGAATGCCACCGAAGACTGCCTACAAACACTAGATCCGCAGTTTTCGGATACATATCCCCAGATCCAAAACGCTGCCAAGGAGTTGAGACTTAACGCGTGCAGCCTCTGCGATTACACGTGCAAATTCAAAAGTAGATTACTCCTGCATATGATGACGCACACGGGCGAGAAACCGTTCTCTTGCGACCAATGCGACAAGAAGTTCATAAAGAAACACCATTTAAACGATCACAGGAGAACGCATACCGGCGAGAAACCGTACGCCTGCGAGCTCTGCCAGCGGAACTTCATACAAAAGCAACATCTTACTGACCACATGAGGACTCACACTGGCGAGAAATCCTTCTCGTGTGACATATGTCTCACCAGATTCACAAAGAAATGCAATCTCAACTCGCACATGCTCACGCACACCGACGCGAAGCCGTTCTCGTGTACATTGTGCCCGAAGACGTTCGGACAGCAGCGCCACTTGAACTCCCACATGAAAACGCACGCGGGCTACAAACGCTTCTATTGTGAGATATGCGAGAAGAAGTTCACGCATAAACGCTCCCACATGAGAATACATTTCAGGAAGCAGCCTCATACTGGTGATGAAAGTCACGCGCAAACTATCGTtaaggttgtcagaaaaTCTCCCTCGCCGAAGGAAGGCAGGAAATACGGTAGAGCTGTGTGTAAAAAAAAGGCAACCGAGTCCCACAGTCGTAGtgtttataaaaAGGCTTCCTTATGTCCACCCCGCCGCCGTAAAGCTGTTAAGAAGACTTACTCTTGCAATATTTGCGACTATAAATGTAAATGCAAAAGTACGCTGGTGATACACATGAGCACTCACAACGGCAGGAAACCATATAGTTGCGAGGAATGTATCGCCAGTTTTACATTCAAGCGTAATTTGACAGCTCACATGCGCTCTCACGCTTCtgcaaaatgtttttgttgCGACATATGCCAGgcggtatttaaaaataaagccaatttaatttatcacATGAAAACTCACATGGGCGATAAACCTTTCGCCTGTGGACAGTGTCAGGCTAAATTTATTCGCAAACACCATTTAACTTCCCACATGAGGACCCATACTGGGGAGAAACCGTACTCTTGTTCGCTGTGTGACGCGAAGTTCGCAGTATTGAGCACTTTGAATAATCACTTGAAGGCTCACTCTGGCGAGAAGCCGTACTCTTGTCTCTTGTGTCAGACTAAATTTGCAAACAAACACGCTTTAACTGTCCACATGAGGTACCACACTGGCGAGAAACCGTTTTCGTGTGGCGTATGCGAGGCTaaatttacaattaaacaaGGTTTAACGAGTCACATGAGGAGTCACACTGACGCCAAACCTTTTCCTTGTGATCAGTGCGAGGCTTCGTTTAAATACAAGCAAAATTTAACAACCCATGTGAGAACCCATACCGGCGAGAAGCCTTATTCCTGCACAGTTTGTAACTATAAATTTGCGCAAAGTAGTGCTCTAGTGAGGCATATGAAGACTCATGTTAGGTAG
Protein Sequence: MEERGNVSADTSFLIIPKTEIGEELEITFENDCIDNKDFIIPKKEFSGSSQHSDDEYLNKPIELLMPIKKEIFEEDESTDCTDTILDVPNHVTLQIEFEPEANATEDCLQTLDPQFSDTYPQIQNAAKELRLNACSLCDYTCKFKSRLLLHMMTHTGEKPFSCDQCDKKFIKKHHLNDHRRTHTGEKPYACELCQRNFIQKQHLTDHMRTHTGEKSFSCDICLTRFTKKCNLNSHMLTHTDAKPFSCTLCPKTFGQQRHLNSHMKTHAGYKRFYCEICEKKFTHKRSHMRIHFRKQPHTGDESHAQTIVKVVRKSPSPKEGRKYGRAVCKKKATESHSRSVYKKASLCPPRRRKAVKKTYSCNICDYKCKCKSTLVIHMSTHNGRKPYSCEECIASFTFKRNLTAHMRSHASAKCFCCDICQAVFKNKANLIYHMKTHMGDKPFACGQCQAKFIRKHHLTSHMRTHTGEKPYSCSLCDAKFAVLSTLNNHLKAHSGEKPYSCLLCQTKFANKHALTVHMRYHTGEKPFSCGVCEAKFTIKQGLTSHMRSHTDAKPFPCDQCEASFKYKQNLTTHVRTHTGEKPYSCTVCNYKFAQSSALVRHMKTHVR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -