Paeg002518.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pararge aegeria
Gene Symbol
-
Assembly
GCA_905163445.1
Location
NC:9353291-9393387[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 1.6 66 3.9 1.3 3 19 268 284 266 286 0.94
2 25 9.8e-06 0.0004 20.3 0.7 1 23 449 471 449 471 0.97
3 25 0.19 7.9 6.8 5.3 1 23 477 499 477 499 0.98
4 25 1.2e-05 0.00051 19.9 2.5 1 23 505 527 505 527 0.99
5 25 2.4 96 3.3 0.2 2 16 534 548 533 550 0.91
6 25 5.1e-05 0.0021 18.0 1.1 1 23 561 583 561 583 0.99
7 25 9.8e-07 4e-05 23.4 6.4 1 23 589 611 589 611 0.99
8 25 0.0027 0.11 12.6 3.6 1 23 617 639 617 639 0.99
9 25 0.00014 0.0059 16.6 4.9 1 23 645 667 645 667 0.98
10 25 4.9e-07 2e-05 24.4 2.4 1 23 673 695 673 695 0.98
11 25 0.00088 0.036 14.1 6.0 1 23 701 723 701 723 0.99
12 25 0.00084 0.035 14.2 6.0 1 23 729 751 729 751 0.99
13 25 5.3e-05 0.0022 18.0 0.9 1 23 757 779 757 779 0.98
14 25 0.033 1.4 9.2 3.2 1 23 785 807 785 807 0.98
15 25 2.8 1.1e+02 3.1 3.8 1 23 813 835 813 835 0.96
16 25 0.00017 0.0068 16.4 2.8 2 23 842 863 841 863 0.97
17 25 0.0027 0.11 12.6 1.7 1 23 869 891 869 891 0.97
18 25 1.7e-05 0.00071 19.5 3.4 1 23 897 919 897 919 0.98
19 25 0.016 0.64 10.2 0.2 1 23 925 947 925 947 0.98
20 25 0.0014 0.056 13.5 2.0 1 23 953 975 953 975 0.96
21 25 0.0021 0.087 12.9 0.8 1 23 981 1003 981 1003 0.98
22 25 0.077 3.2 8.0 6.7 1 23 1009 1031 1009 1031 0.99
23 25 0.00018 0.0075 16.3 3.1 1 23 1037 1059 1037 1059 0.98
24 25 0.00014 0.0057 16.6 1.6 1 23 1065 1087 1065 1087 0.97
25 25 0.4 16 5.8 7.2 1 23 1093 1115 1093 1115 0.98

Sequence Information

Coding Sequence
ATGCAATATTGTGTACCTACCTGCAGCAACACTCCGGACCGTGCATCCACGGCTGACGGAATGGTCAGACTCGATGCGATTACTTTTCACGGTTTACCCAGTGAAGAATGTCTCCGTGCAGCTTGGCTAAGATCTCTCGGCAAACAAGACACTCAGCTCCCCGACTCTGCTGCGGTCTGCATGCAGCATGTCATAGATGACATATATGAAACAGAAAATGGTTTCAGGGAAATTGAAACTGGAGCCATTCCTTCAATAGTGCAGGTTTGCATGTTATGCCTGGATACGGACAGTAGGCTATTTCTAATGAGTAAACACAAATTGGAACAAGCGTATGAACAATTGACCGGATATTCTTCGTGTGATCAAGGAAATCTGAGGCAGACACTTTGCGCACACTGCGCTCAGAGATTGATGAACTTCAGTAGATTTAGAGACCAGACCTTGAAGGCCCGTTCACTGATGCTGGACTTAGTTGAGAAGCATAAAATTATTACATTGCAACATATACAGTCGGTAAAACATACAGATTACCGACCGAAGATCAATTTAATATCAACAATCCTAGGACCTGACCACTTCGACTTTCACGTAGAACATCCTGATGTAGATACACCAACAGAATTCGAGAAAGCTGTAGAAGTTAAAAAAGAAGTTTACTATGATACTGTGATGGGTGATGAAGGCATAAAACTGTTGAATGAAGATGGCAAACAAGTTCACAATAACAACGACGAGTTAATTGGAACTATTGAAAAAGAAGAAATGGACAAAAATCTTTGTGAAAGTGCCACCTTTGGATGTACACTTTGCTTTGAGGAGTTTAAACATGAACATGAGTACAATGAGCATGCGAGCGGGAATTTCCAGAGCGGAGGTGGTGAGGTCCAATGCGAAACGAGCAAGCCTTGTACAGCAGCAAGCTCGCGCTGTGCCGCTTCAAACTCCTCGGAGCTCAAGTATGCAGTTCAAAATTCGGATGATGTCTCTCACACTTCCGCAGAGTTAGCTCATATTTCAGCTGGGGGACTCGCAGAACTTAAAGATAACAAAATAGAAATGTTTTCAACTGCAAAAACGGATACAATAATAAAGAGAGAATTAGTACATTCTATTAAAGATGGGGACAACAAATCTGACACCAgctttaaaacaaacataaacatcAAGGACGATTTCAAAGGACTTAAGAAATCGCCAATATATATTAGTTCTTGCGACAGTCGGTGTGAGATTCCGGTGATACGAAGCACGTGCGTTACACGAAACACTGTACAAAATGCCATGAATTTACAATTGAATAATTCTCAAGGTAGTTTACGCCCACGTACTGAGGCACAGGTGTACATTTGTGCAGTTTGCAATAAAACCTTCATAAGTAAAAATTCGTTGTCCAAACACATAAATAATCACAATAGACTAAAGCGGTACAGTTGTAAATACTGtccgtacataagtaaattcaAGCATCATGCTGATATGCATATGCAAACTCACACCGGTGAAAAGCCTTATTCGTGTGATCTATGCGAATATAAATGTGCGCGGAGTAATAATTTGGCGAGGCATATGCGAACTCACACAACTAAAAAGATTAGTTATTGTAAGTTATGCGATTATAAAAGCGACAGAAATAGTGATTTGGCATTGCAAATGCTGACTCACACCGGAAAAATGCCATATTCTTGTAATATATGCGAGTATAAAAGCACAAATAATAATAGCCTAGTGATGCACATGAGAACTCACACAGGCGAAAAGCCTTACTCTTGTAAGATATGCGACTATAAGTTTTCACAAAACAGTCACCTGCATCGTCATATGCTAACTCACTCTGGTGAAACGCCCTATTCTTGCAACTTATGCGAATATAAATGCGcatataacattaatttattgaagCACAAGCGTACGCACAGTAgagataaaaattacttttgtaatgtATGCGACTATAAATGTGCCAAAAATAGTCACCTTGTGTTGCACATGAGAACACACACTGGCGAAAAGCCATATTCTTGTGAGGTATGCGAGTACAAATTTGCTAGAAACAGTCATCTGCGGCGACACATGATCACACATTCTGGTGAAACTCCATATTCTTGTAAGTGGTGCGACTATAAATGCGCACAAAAATGTTACTTAGTGTCGCACATGCGAACTCACACTGGCGAAAAGCCTTATTCTTGTAAATTATGCAAGTACAAATGTGCACATAATACTGCACTAATAAAGCACATGAAAACACACACCGGTGAGAAACCGTTCTCGTGTAAATTTTGCGATTACAGATCTGCACAGAACAGTGCACTGGTGATGCACATGAGAACTCACACTGGCGAGAAGCCGTATTCTTGTAGGCTATGCGAGTATAAATGCGCACGTAAAGGCTCCCTAGTATTCCACATGAGAACTCACACCGGCGAGAAGCCATTCTCTTGTGAGCTATGTGATTACAAATGTAAAGCCAAATACGGAATTATATGTCACATGCGAGTACACACCGGTGAGAAGCCTATATCTTGCGAGCTGTGCCAGTTCAAATGCGTCCGAAACAGTAGCTTAGTGAAGCACATGAGAACTCACACTGGTGAGAAGCCATTTGCTTGTTCCTTCTGCGATTTCAAATGCGCACTAAAAAGTTACCTAGTGATTCACATGCGAATACATACCGGCGAAAAACCATTTTCGTGTACGCTGTGCGATTACAAATGTATACGTAACTCTCAACTGACGAGTCACATGCGAATCCACACGGGTGAAAAGCCGTACTCTTGTAAGTTATGCGACTTCAAATCCGCCGAAAGTAGTGTCCTGGTGACGCACATGGCAACGCACACCGGCGTAAAGCCGTTTGCGTGCAACTCGTGCGACtataaatgtgttaaaaaaagttatttagtgCGGCACATGGTCATCCACTCGGGCGAAAAGCCTTATTCGTGCAATTTATGCGATTACAAATGTGCACTGAAAGGTAATTTGGGGCTGCACATGGCGACGCACAGTGGTGAGAAACCGTATTCGTGTAAGTTGTGCGAGTACAAATGTTCGTGTAAAGGCAGCTTAGTGAAGCACATGAAAACGCACTCCGGCGACAAGCCTTTCTCTTGTGCGTTGTGCAAGTTCAAATGCGTGCAGAACAGCGATTTAGTGAAGCACATGAGGACACACACCGGTGAAAAGCCTTTCCCTTGCGACGTGTGCGAGTATAAATGCTCGAACAAGGCTTATTTGATGAAGCACATGACAATTCACACCGGTGTCAAACCGTTCTCTTGTAAGCGATGCGAATATAAAACTGCGCATAAAAGTAAGCTAGTGTGTCACATGAGAACTCACaaggattaa
Protein Sequence
MQYCVPTCSNTPDRASTADGMVRLDAITFHGLPSEECLRAAWLRSLGKQDTQLPDSAAVCMQHVIDDIYETENGFREIETGAIPSIVQVCMLCLDTDSRLFLMSKHKLEQAYEQLTGYSSCDQGNLRQTLCAHCAQRLMNFSRFRDQTLKARSLMLDLVEKHKIITLQHIQSVKHTDYRPKINLISTILGPDHFDFHVEHPDVDTPTEFEKAVEVKKEVYYDTVMGDEGIKLLNEDGKQVHNNNDELIGTIEKEEMDKNLCESATFGCTLCFEEFKHEHEYNEHASGNFQSGGGEVQCETSKPCTAASSRCAASNSSELKYAVQNSDDVSHTSAELAHISAGGLAELKDNKIEMFSTAKTDTIIKRELVHSIKDGDNKSDTSFKTNINIKDDFKGLKKSPIYISSCDSRCEIPVIRSTCVTRNTVQNAMNLQLNNSQGSLRPRTEAQVYICAVCNKTFISKNSLSKHINNHNRLKRYSCKYCPYISKFKHHADMHMQTHTGEKPYSCDLCEYKCARSNNLARHMRTHTTKKISYCKLCDYKSDRNSDLALQMLTHTGKMPYSCNICEYKSTNNNSLVMHMRTHTGEKPYSCKICDYKFSQNSHLHRHMLTHSGETPYSCNLCEYKCAYNINLLKHKRTHSRDKNYFCNVCDYKCAKNSHLVLHMRTHTGEKPYSCEVCEYKFARNSHLRRHMITHSGETPYSCKWCDYKCAQKCYLVSHMRTHTGEKPYSCKLCKYKCAHNTALIKHMKTHTGEKPFSCKFCDYRSAQNSALVMHMRTHTGEKPYSCRLCEYKCARKGSLVFHMRTHTGEKPFSCELCDYKCKAKYGIICHMRVHTGEKPISCELCQFKCVRNSSLVKHMRTHTGEKPFACSFCDFKCALKSYLVIHMRIHTGEKPFSCTLCDYKCIRNSQLTSHMRIHTGEKPYSCKLCDFKSAESSVLVTHMATHTGVKPFACNSCDYKCVKKSYLVRHMVIHSGEKPYSCNLCDYKCALKGNLGLHMATHSGEKPYSCKLCEYKCSCKGSLVKHMKTHSGDKPFSCALCKFKCVQNSDLVKHMRTHTGEKPFPCDVCEYKCSNKAYLMKHMTIHTGVKPFSCKRCEYKTAHKSKLVCHMRTHKD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-