Pmar000387.1
Basic Information
- Insect
- Paracoccus marginatus
- Gene Symbol
- -
- Assembly
- GCA_900065295.1
- Location
- FIZT01016831.1:1130-4147[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0046 0.37 11.6 5.1 3 23 243 264 242 264 0.92 2 10 0.0013 0.11 13.3 4.7 3 23 323 344 322 344 0.95 3 10 3.5 2.8e+02 2.5 2.2 1 23 574 597 574 597 0.91 4 10 0.02 1.6 9.6 0.4 2 23 638 660 637 660 0.95 5 10 0.00029 0.023 15.4 0.4 3 20 693 710 692 711 0.95 6 10 0.33 26 5.7 6.5 3 23 746 767 745 767 0.96 7 10 0.074 5.9 7.8 5.4 2 23 781 803 780 803 0.95 8 10 0.00051 0.041 14.6 0.5 3 23 846 867 844 867 0.92 9 10 0.013 1.1 10.1 0.8 1 23 918 940 918 940 0.98 10 10 0.043 3.4 8.5 2.5 1 23 948 970 948 971 0.95
Sequence Information
- Coding Sequence
- atgtcaacgtTATTTTCGGTGATGCCGAACGACGACGTACGAAACGCCTCCGTACAAAACACCGCCGTCTGCCTTTCCTTGCCCAGGAAACACCTACCTTTCGACGAACGCGAACGGATTAAAAAACGCCGCAAACAACTAAACCCAGTTCGCCTATCGTTAGACTACGTCCGATCCGAAGACTCGATCAACGACAAAGACGACAACGCTTCCAGTACAGATTCGTCGTCCGAGAAACATATCACGTATTACAACACCATCGAACCGTCTACCAgtaattttacgaaatcaGAACCCGGCCCGGATCCCAGCCTGGAGTCCATCTCCGTACCtttaaatttgacgaaaaattcacgCGTCGAGAATTTCGTCAATTCGATCTCGTCACCGGAGACGACCACAGCCAAACCGATAGACGGATACGGTACCAGAATCGTCGaagataaattaaatttattcgccACTCGCATCAAAGACGATTCAACTTCCAAGTTCACCAACCCCAATTCAACCACTGTCAAGGGTCAAATCCCGGAGTCGAACGAGTCGCCGCCGAATTACGAACATTTCTTGGCCGGTAGTGCCGCCTTCCACGATGAGAAACTGCAACACAAAGACCAGTCACCACCGTTCTCGCCCCGTACGCCGCCCGTACCTGTGATGCGTAGCTTATTTACGAACGCCGTGACACGCACGTCTTGTCGTATCTTCAATCCGGAAGCGTTTTGTAACATATGCAACAAGGAGTTCTGTAATAAATACTTTCTAAAGACGCACAAAGCCAATAAGCACGGCGTGTATTGCGAAACGAAGGATAGCAATTCGCCGGCCGGCGCCGATACCAATGAAACGCTATCCAATCCTGTCCCTCTGATGTTCACCTGGaacgtaaaaaataacaacgttAAATTACCATCGAATCCGTACCTCATAAACGCGAACACGGTCAAAGATTCGTCAGCGTTTTGTAACATCTGCGAAAAAGAATTCTGCAATAAGTACTTTCTACGTAGACATAAGGAAAAAATGCACGGTATAGTGTCCTATAACGACGGTCGTAAATCCGACACCAGTTCCGATTCCGATAACAAAACTGGAAAAGAGAACGACGACTCTGAACGGGATCTCAGAACGGTTGGTCAATTCGACGACCCGAAATCCTATCCTACGAATGTTTACCAAGAGAAACCGAAAAACGAGCttaaccaaaatttaaaatgcgatttcgtcaaaaatatcaaagaagGTAAACTCAAGTACCCGAAATACTCGACCAACATGGCCACGGACGCTGTTccagattttctgaaaatttgcctAACCAATACAGCCGTACCAAAGACGCCTAAACCTAGCTTAGACGAACGGTTCATCAAGGACGAAAACggcgggaaaaaattcgctctcgATATGGTCGAAGATTTACGAGAATATTCGAAAACCCACGACAAAGACTGCGATAACAGCATAGtgaatttaattattaaaaaagaagacaCCCGAGTGAGCGATTTCAACTGCCAACAAAACATATCCATTTCCTCGGCGGTCGCCGCCGAATACGATCTTCGAAAGGCGTCCAAATCGACGGGCGAATTCGGCGTTCAAGCTAAAGAAGAAGATTTCCACGACATAGGCGATAAACGAGCCCCCAAAACTGGTACTCGGCAGCAATCAGTTGACGAACTACATCCGCCAGAAGACGACCGGCTAAAAAAATACGCTTGCGAATTATGCTCGAAAAAGTTGTCGACGTTTTCGATTATGAAACTGCATCATAAATACGTGCACGCCATGAACGTCGAGGATACCATTAAAACCGAAGGCTGCGTCGAAGAAGCGGAATtcaagaaaatggaaaacgttTACTTCATGATATTGAAATTCAGCTTACTCAATACGGTCGTAACGTATTGCGAAATCTGTAAAACGgaatttgaaaagaatgaCGTGCTCGAGATGCACTTGATGAACAAGCACGGCGTCTTGGTCGACGAAATCAGTCGCATCATCGAGGACGCCGGCGTGAACGGAATGTTGGTACCGGCGATGAGTGTGGGCGATGGCAATCTACTGTGCCAGATCTGTAACAAGACTTTTACGACGAATGCTTCCTTCCAGCAGCACGTGTACGAGAAATGCGGCCCGGCGCCAGATTTCAAAGACTATTCCGAGTATTTTCCTAGTCTGTCGTTGGATGACACCGTTTGCGACTCTTCCAAAACGcggaatttttgcgaaatctgtaaaaaagaattatgCAATAAGTACTTCATGAAAACGCACATGCACCGAATGCACGGTATATCCATCCAAAACGGCGTCAGAATCGGCGGCGTTACGTGCGAAATTTGTAACAAAGAGCTGTGCAGCAAGTACTTCCTACGGGTACATAAAAAGAACTGCCACGGAATCATGGAGAACGCGGCGCAATACGCGAATAGCCGAATTATAaaccaacaacaacagcagcagcagccgcAAGCCGACGCCGATAAAGACGAATACGCGGCCCAAAAACATGCCTCacaaatttgctcaatttgcggacgtattttcaaaagcatGAAATGGCTGAAAACTCATCTATTCAACGATCACGGTAAAATAGGCGCCGCCAGATGGCAAGATATTCTTAATAGTTTCAACGCCGAGCACGAGTCTTCGACCATTAGTTCGGGTACAGACGATCCGGAGTATACGAGCCAATCGTCGTACGCCGAGGTCGACGATAAACCCGCGACGCAGATGTATCAATGCTCCAGTTGCCAGTTCCAAACTTCCAACGTTGAGTTGCTAATTACCCATCAAAGACTGCATTTGAAAGCAGGTGAGTTGCAGTATCGCTGTATGTACTGCTTCGTTTTTACCAAAGATAAAAATTCCCTAGAAGAACATATCGCCTATCATCATTTCACCGCTAGCAACGCGACCGACTTCCACGATTCGTCGCCTTTTGATCTAGCTATAACAAACGGTAACTGCGCAAGGGTGATAGATTACGACAGAAGTAATTGA
- Protein Sequence
- MSTLFSVMPNDDVRNASVQNTAVCLSLPRKHLPFDERERIKKRRKQLNPVRLSLDYVRSEDSINDKDDNASSTDSSSEKHITYYNTIEPSTSNFTKSEPGPDPSLESISVPLNLTKNSRVENFVNSISSPETTTAKPIDGYGTRIVEDKLNLFATRIKDDSTSKFTNPNSTTVKGQIPESNESPPNYEHFLAGSAAFHDEKLQHKDQSPPFSPRTPPVPVMRSLFTNAVTRTSCRIFNPEAFCNICNKEFCNKYFLKTHKANKHGVYCETKDSNSPAGADTNETLSNPVPLMFTWNVKNNNVKLPSNPYLINANTVKDSSAFCNICEKEFCNKYFLRRHKEKMHGIVSYNDGRKSDTSSDSDNKTGKENDDSERDLRTVGQFDDPKSYPTNVYQEKPKNELNQNLKCDFVKNIKEGKLKYPKYSTNMATDAVPDFLKICLTNTAVPKTPKPSLDERFIKDENGGKKFALDMVEDLREYSKTHDKDCDNSIVNLIIKKEDTRVSDFNCQQNISISSAVAAEYDLRKASKSTGEFGVQAKEEDFHDIGDKRAPKTGTRQQSVDELHPPEDDRLKKYACELCSKKLSTFSIMKLHHKYVHAMNVEDTIKTEGCVEEAEFKKMENVYFMILKFSLLNTVVTYCEICKTEFEKNDVLEMHLMNKHGVLVDEISRIIEDAGVNGMLVPAMSVGDGNLLCQICNKTFTTNASFQQHVYEKCGPAPDFKDYSEYFPSLSLDDTVCDSSKTRNFCEICKKELCNKYFMKTHMHRMHGISIQNGVRIGGVTCEICNKELCSKYFLRVHKKNCHGIMENAAQYANSRIINQQQQQQQPQADADKDEYAAQKHASQICSICGRIFKSMKWLKTHLFNDHGKIGAARWQDILNSFNAEHESSTISSGTDDPEYTSQSSYAEVDDKPATQMYQCSSCQFQTSNVELLITHQRLHLKAGELQYRCMYCFVFTKDKNSLEEHIAYHHFTASNATDFHDSSPFDLAITNGNCARVIDYDRSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01491448;
- 90% Identity
- iTF_01472731;
- 80% Identity
- -