Basic Information

Insect: Paracoccus marginatus
Gene Symbol: RREB1
Assembly: GCA_900065295.1
Location: FIZT01008587.1:2342-8389[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.013 1.1 10.1 0.0 1 23 75 97 75 97 0.98

2 12 0.026 2 9.2 0.3 2 23 103 124 103 124 0.95

3 12 0.00018 0.014 16.0 0.3 1 23 295 317 295 317 0.98

4 12 0.00067 0.054 14.2 0.4 1 23 327 349 327 349 0.98

5 12 0.021 1.7 9.5 4.1 1 23 355 378 355 378 0.97

6 12 0.05 4 8.3 1.2 1 23 801 824 801 824 0.96

7 12 0.014 1.1 10.1 1.5 3 23 1057 1077 1055 1077 0.96

8 12 0.41 33 5.4 4.8 1 23 1083 1106 1083 1106 0.94

9 12 0.017 1.3 9.8 1.6 1 23 1150 1174 1150 1174 0.94

10 12 0.023 1.9 9.4 0.6 1 22 1251 1272 1251 1274 0.86

11 12 0.003 0.24 12.2 0.3 3 23 1332 1352 1330 1352 0.96

12 12 0.0026 0.21 12.3 4.6 1 23 1358 1380 1358 1380 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.013	1.1	10.1	0.0	1	23	75	97	75	97	0.98
2	12	0.026	2	9.2	0.3	2	23	103	124	103	124	0.95
3	12	0.00018	0.014	16.0	0.3	1	23	295	317	295	317	0.98
4	12	0.00067	0.054	14.2	0.4	1	23	327	349	327	349	0.98
5	12	0.021	1.7	9.5	4.1	1	23	355	378	355	378	0.97
6	12	0.05	4	8.3	1.2	1	23	801	824	801	824	0.96
7	12	0.014	1.1	10.1	1.5	3	23	1057	1077	1055	1077	0.96
8	12	0.41	33	5.4	4.8	1	23	1083	1106	1083	1106	0.94
9	12	0.017	1.3	9.8	1.6	1	23	1150	1174	1150	1174	0.94
10	12	0.023	1.9	9.4	0.6	1	22	1251	1272	1251	1274	0.86
11	12	0.003	0.24	12.2	0.3	3	23	1332	1352	1330	1352	0.96
12	12	0.0026	0.21	12.3	4.6	1	23	1358	1380	1358	1380	0.97

Sequence Information

Coding Sequence: ATGATTCATAAAAATGGTAACCTGTTGGAGCAACCTGTTGCGTTACCATTGAAACGTAAATCGTTGATGATTCTGAACAACAATTCGGTCATCGTCAACAAGAATAAAGTTACCGAAGACGAAACTCCCTCGGACAGCAACGACGATAATAACAACGACTACGTAGAACGCAGCGACGACGATCACAACAACGTCGGCGATACGAAATTCTACGACAACGAATTCAAATGTCCAGTCTGCCCGCAGATCGGCTCGACCATCGAAGGGCTCGAAGAACACTTGAAACAGCATCCGAATTATAAACCGACGTGCACCCATTGCGGCGAGGTGTTTGGCGATTTGCAAATATTGATCAAGCATACCGCGATGCACGTGACGGATAAATGTGCCATACGCAATaatcaaataaatttgaaaattttaaattatctaGAGAATAAGAATAccatttaccaaaaattagccGAAACTATCGACGCTAGTCAATCGTACAGATGTAACTTCTGCAACGAGTTATTTATCGGTAGTCACTTCATGACGCATTGGAAGCAATGCAAACATTTCCAGTCGGacgattcgaattcgaagcTCACCAATTCGGACGAATCGTACAACGCTGATAAATCGCCGAAAGACGACTCCATGGGCGAAGAGACCGAAGAAgccgaagaaatgaaaaatcatttcctaGCCGGGCTAAACTTGCAAAGTAAATCGGATCGGTTATCCGACGACGAAAGTTCGCCCGACAAATCCGAAGTCGTCGCTAAATTATCCAAAGATATTTCCTACGCCAAACACGCGTCTTTCAAAGAAGACGAattaaacgacgacgacgacccgTTCAAATTAGAAGTACGCGACATGAAACGAAGAGGTGAATTCCCGTGCCGcatttgtaagaaaattttccgcaATTTACGAGCTCTGAAGGGCCACGCTCGTATACATATTTCGGGCAACAGAGGCATCATGCCTTACGAATGCAACATCTGCTCGTTCACCACGTCCGATAAATCGGTCGTCATTCGTCACATTCGTAACCACAACGGCGACCATCCGTACAAGTGCCAGTTATGCTTTTCCACCTTCACTACCAAAGCGAATTGCGAACGTCATTTACGCAACGCTCATCGTAAAACGTCTCGAGAAGATATTAAAAAGCTATTAGTCGATTTGAATCATAAAACGTCCAACAATACCGGCTCCAATTTCAACAACAAGCTGCAAACTTTGCTGACcaacaataaaaaaccaaatattaataaattattggcCAAAAAAGTACCGGAAGAATTTAGTCAGAGTTTCTGCCCCGACGACTTCTACAGAAAGGTTAACGATAGGTCGGAAAATTCCGAAGATGAGAAATCCGTTCGCATGTACGAAGACAGTATCACCTTCAACGATCGCAGTGCTCGAAGCGATGCTGACGACAGCAACAACAGTAACGACAGCAATAATAACAACAACGTTGCTGGCGTCAACTCgtgcaaaaaaatagaagatttCGCCGCCATCAACCCAATCCTGCTGGCTGGGTCCGATTACAAGTACCCTACTTTCCATTTACCTTCTGGACTAGACATGCGGCTATCCAAGTCGGAAAAACAATTCTACGAAGCTAATTACAAAACGTACAACGACGTCATCGTTGGCTCAGGACTGATACCGACTATCGTCAAAGATAACGGATTCATTAAAGTTCCTCCGTACGAAACTACCTTCATACCTAACGGCAGTTCGAGTTCCGATCACGACGAGCCGCTAGATTTAAGCGTCGACGTGCTAGATTTGAGTAAGAAGAAAGACGACGCCGCAGACGACTCGGCCGCCGAAGATCTCTCCGTGAAGACGTGCCGCGAAAGCTACAGCAGCGAGAAGTCGGAAAACGCGTCTCCGGTACGTAAACCGCCGACGATTAATCCTTTACTGGTCGGTAACATAAACCAGAGTTTATTCTTCGGTAAAGAAGACCTCAGATATAATTTCGCAAACAACCACCCAATGGTTACCAACTTCTCTTcgtattttatgcaaaatccTAGCGTTAACCTGTTCCCAAATAGTATAAAATTACAAGAAGCCGAAGACGACCATTCTAAAATACGCCCTCTAATATTCAGTCAACTCGTCGCGAACGCCGCCGAAAGATACGAAGGCATACGACAAAGCGTACCGCCGTTTGTCGACTTCACCAAAAAAGTCGATCCCATCGTAAGCGACGAATCGGGCCACGAAAAAGCACCcgtcgagaaattcgataactCCAAATTCAACCATACCAAAGATACGCCGGCCAAGCCTCGAAACAACAAATCGTCCACCGTAAAAATGGTCATGAAAGACGGCGTCCtcgtcgaaaaacaaaaacaacgtcGTTACCGTACCGAAAAGCCATTTTCTTGCGCGTACTGCTCCGGCAGATTTACCCTGCGTTCGAATATGGACCGTCATGTCAAACAACAACATCCCGGATTCTGGAGACAACGTCAGCGTGGCGGATCTACGCGAACGCAACGAACAAAGCATACCAAAGAGGAATCCTGCGAATCGGCTGCGTTCCCATCGACTCTCACTTCGGACACCGTATCCGAGCATGAGACCATATCGCACGATATGGACTACTCGTCGACTCCGGCCGGTAAACGATCTCCTAGCTATGTCAGCGATCACGAAGCCGACACCGAAGATAACGTAGACAAatgcaaaaagaagaaatacgATGATGCGGATAATTCGGTcgtcgacgaagacgacgacgacgacgacgaagaattGGTAATCGACGAAGAAATGGAGGAGCCCGAAAGCGAAGATAAATCTAGCGAACCTTCCACCGCCAATACTTCCCTAGAGAAAGATATCAACGTCAAGGAGGAGAATCCTGATTTGGCTAGCGTTAGAAGCTTGCTCGATAACGTTTCTACGCAAACTTTTAGTCAGTTTTTTCGCCCCGAAGATGACCCCAATAATAAAAATGCCGATGGCAGCGATGACGATGAAGAAGGTTTAGTCGCCGGAAGCAGCAGCGAAGGAAATGGTTCCGGAGGTGAAGAAAATAGAGCTTCGAAcgaatcaaattccaaaaattccgaCAAATCGGCCTCAGGCGACGGtacaaagaagaagaaaagcgCGTACTCTTCAGCGCCGAACCGAGTCCATTGCGATTTTTGCTACAGATCGTTTCCATGGGCATCGTCGTTACGACGTCACACTCTAACCCACACCGGCCAGAAACCGTACAAATGTTCAAACTGCCCGCTTCTCTTTACAACGAAATCGAACTGCGATAGGCATTTCCTAAGGAAGCATCGTTCGCAAATGAACGACTCGTCGCAACCGTGCACGATAACGGTGATTAACAACGTCGAAAGCAGCGACCCTTCCTCCAATACCAGATTGATACCGAACTTTTCCACCAGAAACGTACCCGAGCGACCGTTCAAATGCAGCAATTGCCCTAGTTCAACCTTTTCCACGTATaataatctgaaaaaacaTATCATCGAGAAACACAACCAAAGCGAAGAAAAACTCGTCGAGAATCCTAAATCACCGGCGGCGTCGTACGCGGAAGACTCGCCGAgtaaatgtaaaaaagaaGATTGCAACTTATCCGAAGCCGGCGACGTGAACTTGGTCGAAAAACCCAGCCAAGAAGAGCCGGCcaaagagaaaaatacgagCAATGCTGCGGTCCACGATCAAGCAGCGTTTTTCAACCACGTATCTTCCGATTTACCGTTCAAGTGCCATCTTTGCGATCGTAGTTTCGGTGAAAGGCAAGAAGCGCTCGATCATATGGGCGAAAGCCATTCGGTCGAGTTCCAGCATCTCATTTGTAAAGGAGCGCTTGACATGAATGTCAAAATGGACGATTCCATTAATCATGAAGATGGTATGTTCATGAGCTCCGCCAATAGCGACGAGAACAATACCGACCAATGTCGAGGGCGTTTTCCCGACTACTCCAGTAGAAAAGTAATTTGCGCTTTCTGTTTGCGGCGCTTCTGGTCAGCGGAAGATTTACGTCGTCATATGCGAACCCACACCGGAGAACGGCCATTCGCGTGCGACATTTGTCAACGTAGATTTACCTTGAAACATAGCATGCTTCGACATCGTAAAAAACACTCCAATAAATCGTCCAGCTTCGTTTCAACATCTGGCGAGAATTCGCCCATCTCGGACGACGAAGAGCCATCCTCGCCGGTACCATTTAGTCAAAGTAGTAATCGATCGAACGATAGAAAACCCGCCGATTTCGTTCCAGTCTCGCACAAGTTAAAGAGTTACGATTCGAATGATACGAATGAAGCgagtaccaattttttccccaattcgGACAAACAAGCTAAAGCAATCGAAACCAAATTATCGAGTATTAAAACTAATCTATCCAAAGAAGATGGCGTTGATCTCATAGCTAAATTATTAGATATAGACGATAAGTCGTTGGTTGATGAAATGTTAACGAGTAAATCGGCCGATGATGTTGCTAAATTGTTAGGagttcaaaaataa
Protein Sequence: MIHKNGNLLEQPVALPLKRKSLMILNNNSVIVNKNKVTEDETPSDSNDDNNNDYVERSDDDHNNVGDTKFYDNEFKCPVCPQIGSTIEGLEEHLKQHPNYKPTCTHCGEVFGDLQILIKHTAMHVTDKCAIRNNQINLKILNYLENKNTIYQKLAETIDASQSYRCNFCNELFIGSHFMTHWKQCKHFQSDDSNSKLTNSDESYNADKSPKDDSMGEETEEAEEMKNHFLAGLNLQSKSDRLSDDESSPDKSEVVAKLSKDISYAKHASFKEDELNDDDDPFKLEVRDMKRRGEFPCRICKKIFRNLRALKGHARIHISGNRGIMPYECNICSFTTSDKSVVIRHIRNHNGDHPYKCQLCFSTFTTKANCERHLRNAHRKTSREDIKKLLVDLNHKTSNNTGSNFNNKLQTLLTNNKKPNINKLLAKKVPEEFSQSFCPDDFYRKVNDRSENSEDEKSVRMYEDSITFNDRSARSDADDSNNSNDSNNNNNVAGVNSCKKIEDFAAINPILLAGSDYKYPTFHLPSGLDMRLSKSEKQFYEANYKTYNDVIVGSGLIPTIVKDNGFIKVPPYETTFIPNGSSSSDHDEPLDLSVDVLDLSKKKDDAADDSAAEDLSVKTCRESYSSEKSENASPVRKPPTINPLLVGNINQSLFFGKEDLRYNFANNHPMVTNFSSYFMQNPSVNLFPNSIKLQEAEDDHSKIRPLIFSQLVANAAERYEGIRQSVPPFVDFTKKVDPIVSDESGHEKAPVEKFDNSKFNHTKDTPAKPRNNKSSTVKMVMKDGVLVEKQKQRRYRTEKPFSCAYCSGRFTLRSNMDRHVKQQHPGFWRQRQRGGSTRTQRTKHTKEESCESAAFPSTLTSDTVSEHETISHDMDYSSTPAGKRSPSYVSDHEADTEDNVDKCKKKKYDDADNSVVDEDDDDDDEELVIDEEMEEPESEDKSSEPSTANTSLEKDINVKEENPDLASVRSLLDNVSTQTFSQFFRPEDDPNNKNADGSDDDEEGLVAGSSSEGNGSGGEENRASNESNSKNSDKSASGDGTKKKKSAYSSAPNRVHCDFCYRSFPWASSLRRHTLTHTGQKPYKCSNCPLLFTTKSNCDRHFLRKHRSQMNDSSQPCTITVINNVESSDPSSNTRLIPNFSTRNVPERPFKCSNCPSSTFSTYNNLKKHIIEKHNQSEEKLVENPKSPAASYAEDSPSKCKKEDCNLSEAGDVNLVEKPSQEEPAKEKNTSNAAVHDQAAFFNHVSSDLPFKCHLCDRSFGERQEALDHMGESHSVEFQHLICKGALDMNVKMDDSINHEDGMFMSSANSDENNTDQCRGRFPDYSSRKVICAFCLRRFWSAEDLRRHMRTHTGERPFACDICQRRFTLKHSMLRHRKKHSNKSSSFVSTSGENSPISDDEEPSSPVPFSQSSNRSNDRKPADFVPVSHKLKSYDSNDTNEASTNFFPNSDKQAKAIETKLSSIKTNLSKEDGVDLIAKLLDIDDKSLVDEMLTSKSADDVAKLLGVQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01491408;
90% Identity: iTF_01472705;
80% Identity: -