Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 6.1e-05 0.0048 17.5 0.5 1 21 22 43 22 44 0.94

2 6 4.1e-06 0.00033 21.2 3.9 1 23 52 75 52 76 0.95

3 6 3.4e-05 0.0027 18.3 0.2 2 21 114 134 113 135 0.94

4 6 0.1 8.3 7.3 1.9 1 14 155 168 155 178 0.76

5 6 0.0003 0.024 15.3 2.5 1 21 179 200 179 205 0.94

6 6 1.1e-05 0.00087 19.8 2.5 1 23 209 232 209 232 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	6.1e-05	0.0048	17.5	0.5	1	21	22	43	22	44	0.94
2	6	4.1e-06	0.00033	21.2	3.9	1	23	52	75	52	76	0.95
3	6	3.4e-05	0.0027	18.3	0.2	2	21	114	134	113	135	0.94
4	6	0.1	8.3	7.3	1.9	1	14	155	168	155	178	0.76
5	6	0.0003	0.024	15.3	2.5	1	21	179	200	179	205	0.94
6	6	1.1e-05	0.00087	19.8	2.5	1	23	209	232	209	232	0.96

Coding Sequence: ttgttgaatttttcagaaaccaGATCATTTCTCTATCGTAACTCTTTGGATCAGACGAAAATATTCGTATGCTACAATAAATGTGGAAAGACGTACAGATCCAAAGGTGGCTTGATAAATCACCTCAAGTACGATTGCGGAAAAGAGCCTCAATTCGAATGTAAACTTTGTGGCCGTAAATTCAGACAAAAGGGAAATTTCAAGACTCACGTTTCCGTGTTTCATCATTTCCACCACGTCggccgaaaaattcaaattttttcAATTCCTTGCACCGAATTTAACGGTTACGCAGATGCCGGATTGGCTACCAACGAAGGGTTCGACGGGTATGGTATATCATGCCCTAAAGGATGTGGaaaaacgtataaatacaAGAGCAGCGTTCGCAATCATCTCAGAGAATGCGGAGTCGAGCCCCAATTCACTTGTCGAGTTTACCAGTTTGAAGGCGAGAAACGTTTCAAATGTAGAGTGTGCGGTAGAGCTTTTCACTACAACCGTGTTAAGATCATGCATGAGCATTCAGTGCACTTTCGCTGCCTCAATGGATGTGGCCGCGTGTATAAGTATAAAGGAAATCTTGGCCATCACATGAAGTACGTGTGTGGACACGAAAAACAGTTCAAGTGTAAAGTGTGCGGTAGAGCTTTTCACTTCAAAGCTAATATGAAGAGGCACGAGCGTGCATTGCACTGA
Protein Sequence: LLNFSETRSFLYRNSLDQTKIFVCYNKCGKTYRSKGGLINHLKYDCGKEPQFECKLCGRKFRQKGNFKTHVSVFHHFHHVGRKIQIFSIPCTEFNGYADAGLATNEGFDGYGISCPKGCGKTYKYKSSVRNHLRECGVEPQFTCRVYQFEGEKRFKCRVCGRAFHYNRVKIMHEHSVHFRCLNGCGRVYKYKGNLGHHMKYVCGHEKQFKCKVCGRAFHFKANMKRHERALH

Sequence clustering based on sequence similarity using MMseqs2