Basic Information

Insect: Paracoccus marginatus
Gene Symbol: -
Assembly: GCA_900065295.1
Location: FIZT01020681.1:3394-6253[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.2e-07 2.5e-05 24.7 1.4 3 23 496 517 495 517 0.97

2 9 4.4e-05 0.0035 18.0 4.7 1 23 523 546 523 546 0.98

3 9 0.035 2.8 8.8 0.1 3 23 561 582 560 582 0.96

4 9 0.012 0.95 10.3 0.8 1 20 588 607 588 609 0.93

5 9 0.035 2.8 8.8 2.8 3 23 633 653 632 653 0.97

6 9 0.011 0.85 10.4 0.4 1 23 657 680 657 680 0.95

7 9 7.8e-05 0.0062 17.2 1.7 1 23 686 708 686 708 0.98

8 9 0.00083 0.066 13.9 0.5 1 23 714 736 714 736 0.98

9 9 3.1e-05 0.0025 18.4 1.6 1 23 742 764 742 764 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.2e-07	2.5e-05	24.7	1.4	3	23	496	517	495	517	0.97
2	9	4.4e-05	0.0035	18.0	4.7	1	23	523	546	523	546	0.98
3	9	0.035	2.8	8.8	0.1	3	23	561	582	560	582	0.96
4	9	0.012	0.95	10.3	0.8	1	20	588	607	588	609	0.93
5	9	0.035	2.8	8.8	2.8	3	23	633	653	632	653	0.97
6	9	0.011	0.85	10.4	0.4	1	23	657	680	657	680	0.95
7	9	7.8e-05	0.0062	17.2	1.7	1	23	686	708	686	708	0.98
8	9	0.00083	0.066	13.9	0.5	1	23	714	736	714	736	0.98
9	9	3.1e-05	0.0025	18.4	1.6	1	23	742	764	742	764	0.98

Sequence Information

Coding Sequence: ATGGGATATCGATGTGCTGTGTCAATATGTCGAAATCACAACCATAAGACGCGAACTTCGGATAAATCTGTGAAGTATTATCAGTTTCCGAAAGCTGCGGACATACGAGCCAAGTGGATAGCTGTGTGTGGAAGACTTGACGATTTTGTTGCAGATACTAGTTATATATGTTCGGAACACTTCGCACCAGCAGACTTTCTCCGCGACTTGAAAGCTGAGTTGATGAATTTACCTCCCAAAAAGAATCTTAAGCCTGACGTTATACCTACGCTAAATTTAATATCAAGTACTAAAGCATCCGAAGATCAACCTAACGTCTTACGTAAACGAAAGGGTCCGGAGACACCAAGTGTCAATAGAgagaataaagaaaatttggGTAAGAGCGAAGCCAACGGCGTGAACAACGGATTCATTATATCATATTTAGGTGTTCCAAGATTGTTTATATCgtctaattcgaaaaattccgatgATTCTAAGACTTCCAGTAGGTGGTTTGTTCATCtatgtaaattaaatttggtGAATTTATCTCATATTATGTTAACATTTCACTGTCTCATTTTCACAGGTGAGGGTTCTCAAATTAGAATCATCCCTGTTTGTTCTGAATACACATCAGATATCAGATCAACATCTAGCAGTCAAGAGCTAGGTAATGGTCGGATGGATTTGAGCGAATCTTTaccaaacaaaaatattttcaaattagatgAACTGTGTCGTTTATGTGGCTCCTACAGTAATCGTATGAAAGCTATTTTTGAACAGAGTCGATATAACTATTACGAACTCATTAGCAATCATTTTCCTGATATCAAGgtCAAAAAGGAAGATATATTGCCGCTGAGTATATGTTCTCGTTGTGAATCTACTTTAATTTCTTGGTATCAATTTTATAAGACTTGTAACGCTGTTAACAAAAGATTTCAATCaatagcgaaaaaattaacagaagAACCACCTGTTTTCGTCGCCAAAGAAGATCCGGAGCAAAACATACCGATTAAATTGGAAGTCGAAACGATGGAGGTCCCATCTTACGAAAACTGCGTTGAAAACTCCGACGATTGTCACATCAGCTTTGAGGATAATTCAATCGatgaagaaatcgaaattgTCGAGATTATTCCTGAAATCGAAGAAGCTGATACTGTTGATGTATTtcccgaagaaaaaattatcgaaagttTTCCAGATGTACGAGCGATTCCCGAAGAAATcgaagtcgaagaaaaaatcgaacctcCAGATGAGCAATCGGAGAATATCATTTCCGGCGTCGTAATTAATTGCGAAGAAAATGACGtgaatcaaatcaaaaaagaaaccgaTTGCTTGCAAGTTAGAGAGggaatcgttcgaaaaaaagaaaacgaaatgaTTCATAGATCACCGGattcgttaaaaatgaaaagagAAACGCTTGCAgcccgtcgtcgtcgacgtcgacgtatTCCAGCATTGAACTTACGTCGAATGTGTCATATCtgcggtaaaattttcaaatacccgGAGTCCCTTCGACGGCATCTAAAAACCGTACACTCAGATGAACGACCTTTCAAATGCCACCAGTGCAGTTCGAGTTTCAATCGTAACCACAATTTAACGATTCACATCAAAGTAGTACATCAACGCCAAAGAGTGTACGTGAAGAAGCATGTACCACGACTGTGTGACTATTGTGGTAAAGTTTTACTATCGGCTCGTTCTCTGGAAGAACACATTAGTAGTATACACACGAAAAAAGCTCTTTACGAGTGTGACAAATGTGGCTCAACTTTTTATCGGAAACTATCTTACGATAAACATCGCGCGTCAGAAGAATGTGACGTcacgaatccaaaaaaatgcaacgctCCGAAACCAGGAGAAgcttttcataaattttgtgaatattgCGGACTAGAATTTATAAAAGAACACTTTTACACTAAACATAAACTGAAGCATATGGATAGCTTTACATGTCAGGTATGCTCGACGAAATTCGAAGACGGTAATTCGCTAAAAGAACACGTTGATTCGCAACATCCCGAAGTAAAACCTTTTGAATGTGAAGTTTgcggcaaaaaattcaaaaataagccATTGCTCAATTGTCATCTAATTACTCACACTGGAGAAAAACGTTACCAGTGTCCGGAGTGTCCTTTAAAGTTCTTGAAAAAGAAGTATTTGTCCACTCATATTCTAGTTCATACCGGTGAACGACCGTTCGTTTGCTCATTTTGCAACAAAGGATTCAAACAAAGTGGAGATATGAGGAAGCACAAGGCTACTCATAtgcgaaaaaagaataattga
Protein Sequence: MGYRCAVSICRNHNHKTRTSDKSVKYYQFPKAADIRAKWIAVCGRLDDFVADTSYICSEHFAPADFLRDLKAELMNLPPKKNLKPDVIPTLNLISSTKASEDQPNVLRKRKGPETPSVNRENKENLGKSEANGVNNGFIISYLGVPRLFISSNSKNSDDSKTSSRWFVHLCKLNLVNLSHIMLTFHCLIFTGEGSQIRIIPVCSEYTSDIRSTSSSQELGNGRMDLSESLPNKNIFKLDELCRLCGSYSNRMKAIFEQSRYNYYELISNHFPDIKVKKEDILPLSICSRCESTLISWYQFYKTCNAVNKRFQSIAKKLTEEPPVFVAKEDPEQNIPIKLEVETMEVPSYENCVENSDDCHISFEDNSIDEEIEIVEIIPEIEEADTVDVFPEEKIIESFPDVRAIPEEIEVEEKIEPPDEQSENIISGVVINCEENDVNQIKKETDCLQVREGIVRKKENEMIHRSPDSLKMKRETLAARRRRRRRIPALNLRRMCHICGKIFKYPESLRRHLKTVHSDERPFKCHQCSSSFNRNHNLTIHIKVVHQRQRVYVKKHVPRLCDYCGKVLLSARSLEEHISSIHTKKALYECDKCGSTFYRKLSYDKHRASEECDVTNPKKCNAPKPGEAFHKFCEYCGLEFIKEHFYTKHKLKHMDSFTCQVCSTKFEDGNSLKEHVDSQHPEVKPFECEVCGKKFKNKPLLNCHLITHTGEKRYQCPECPLKFLKKKYLSTHILVHTGERPFVCSFCNKGFKQSGDMRKHKATHMRKKNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01472508;
90% Identity: iTF_01150401;
80% Identity: iTF_01150401;