Pmar013230.1
Basic Information
- Insect
- Paracoccus marginatus
- Gene Symbol
- -
- Assembly
- GCA_900065295.1
- Location
- FIZT01024553.1:11442-14429[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00041 0.033 14.9 0.7 2 23 210 232 209 232 0.96 2 13 5.5e-05 0.0044 17.6 1.6 3 23 278 299 276 299 0.95 3 13 6.7 5.4e+02 1.6 3.6 3 23 317 336 315 336 0.91 4 13 2.4e-07 1.9e-05 25.1 0.9 2 23 343 365 342 365 0.97 5 13 0.00017 0.013 16.1 0.5 1 23 371 394 371 394 0.96 6 13 1.7e-05 0.0013 19.3 3.1 1 23 403 425 403 425 0.98 7 13 0.046 3.6 8.5 0.7 3 19 453 469 451 474 0.89 8 13 0.094 7.5 7.5 3.8 1 19 490 508 490 513 0.83 9 13 0.0027 0.21 12.3 0.9 2 20 524 542 524 544 0.93 10 13 0.022 1.7 9.4 0.3 2 23 550 572 550 572 0.93 11 13 3e-05 0.0024 18.5 1.8 1 23 578 601 578 601 0.98 12 13 6e-06 0.00048 20.7 1.0 1 23 607 630 607 630 0.97 13 13 0.0041 0.32 11.8 5.5 1 23 636 658 636 658 0.96
Sequence Information
- Coding Sequence
- ATGATTACGGTTGATACAATTTTATCAGATTTCCATGATCTTAGTAAACTGGAAGACCTGTGTAGATTGTGTGGAAAACTTCAGCAGACGAATGTTCCTATCTTTGACGAAACCCATCGttacaattatttcaaacttaTTAACATTCATTTCAAGGATGAGCTTCAAGTGTCCAAGACTGATATATTACCTTTGAAATTGTGCGCCAAATGTCTGAAAGCTGTAATGACATGGCATGAATTTTACCACGATTGCTTGAAagtcgaaaagaaatttaaaaaattagtcgataaATTCAGCCTAAACCAAGATTCAGAAAAAAGGAGTTCAGCTTTTGTGAATGACGTTGAAGTAATCGAAGTCAGCGTTGATGGCGACAATTATGATTTCTTCAATGAAAGCGCAAATGATTTTGATATATCCAACGTCAATATTAAAGAATCGACAACCTTCGCTAAtgccaacaatttttcacattttgataGTTTGGTCAATGCAAATGACTCAGTTTCCAGCGCAGAGAATAAAACTTCGGACAAACCTAGTGATCATTCCGAaccGGCCATCAGTGGCGATAAAAACACATCGTTGCCATTAcaacaaaaaactaaaaaaaaaaaatccaccgtATGTCGTATCTGTGGTAAACTGTACACAAATCGCAGTACATATTTGAGTCACTTACAGAAAGCACATTCTTCTCATCACACTGCCAAAGCTGCTAAAAAGTCTTCTACTCAACCTCAGTCACAACAGCAATCGAAACAAGCGGAATCGCAACCGTCGCAACCAGCTCAACAGAAAACGTCAGCGAATGCCGTACCGGACATATGTTACAAATGTGGTAATATGTTTAAACATCCCAGTAGTTTGAGGAATCACTTGAAATACATACACGGCGCCGCAGATCCGGAAACTGCCAAGCTGCCTCCGAGGCCGCCTAAAATGTGCGATCTTTGCGGAAAATTATGCAAaggtaattatttcaaatcgcACATGCTGAAACATTCAAATCCCGATTCAGTCACGTGTAAAGACTGCGGTAAAGTTTTCGCTTATGCGTCTACACTGCGTAGTCATATCAGAGTTTGCCATACCGATGTCAGACCCTTCCAATGTACTGTGTGCGCTATGGGTTTCAAAAGAGCTGACTATTTGAGAGCGCATTTTCGTGCTAAGCATCGTGAtgccaaaatggaaaatacgtataaatgcgaTCACTGCGGTTTGTCGTAtaaaaccaagaaaaattacttgatTCATTTGAAAGCGCATGAAGATGGTTATGTGAAAACTGTAAAACGAAGACCCAGGGCTAGGGAAGAAATCGATCCAGACGGTACTGTTAAATATTGGTGTACTAAGTGTGATTTGccattcaagaaaaaaaattacctattattgCACGATCGCTACGTTCATGTCAAAGGAAAACCATATTCGATCAGCGAGAATGCCGAGGGGCAGTTTAAATGTGATCAATGTGATAGAAGATTTTCGTCGGTCAGCGGACGTAATTACCATTGCAAAATTACCCATGGTAAAAAGTTTGACATGAATTTCAACGCCCAGTGTGATCACTGCGGGTTAAGGTTTACCAATCGAGTTTTTTACGCCAAACATCGGGCCAGGTTGAACGGTACACCTACGTGTTACCTGTGCTCGCAACAGTTCAACACAGACGAAGAATTAACGAAACATGTCGACATCGACCacttcactgatttgcctttCGTTtgcgaaatttgtaaaaaacgaTTCGTAGCGTTGAAAAATCTAGATCATCACATTAGAACGAGACATTACAACGATAAACCATACAAGTGCGATATTTGTGACCATAGAACGACTAGAAAAGACTCGTTGGAGATACACATCAGAGGACTTCACCTCGGAGAAAAACCGTACGAATGTGAATTTTGCGGAAAGAAATTCTCCCAGAAGAATGACTGTCGAAAGCACAAAGTCAAGCATGACAGCAGTTGGCAAAAATGA
- Protein Sequence
- MITVDTILSDFHDLSKLEDLCRLCGKLQQTNVPIFDETHRYNYFKLINIHFKDELQVSKTDILPLKLCAKCLKAVMTWHEFYHDCLKVEKKFKKLVDKFSLNQDSEKRSSAFVNDVEVIEVSVDGDNYDFFNESANDFDISNVNIKESTTFANANNFSHFDSLVNANDSVSSAENKTSDKPSDHSEPAISGDKNTSLPLQQKTKKKKSTVCRICGKLYTNRSTYLSHLQKAHSSHHTAKAAKKSSTQPQSQQQSKQAESQPSQPAQQKTSANAVPDICYKCGNMFKHPSSLRNHLKYIHGAADPETAKLPPRPPKMCDLCGKLCKGNYFKSHMLKHSNPDSVTCKDCGKVFAYASTLRSHIRVCHTDVRPFQCTVCAMGFKRADYLRAHFRAKHRDAKMENTYKCDHCGLSYKTKKNYLIHLKAHEDGYVKTVKRRPRAREEIDPDGTVKYWCTKCDLPFKKKNYLLLHDRYVHVKGKPYSISENAEGQFKCDQCDRRFSSVSGRNYHCKITHGKKFDMNFNAQCDHCGLRFTNRVFYAKHRARLNGTPTCYLCSQQFNTDEELTKHVDIDHFTDLPFVCEICKKRFVALKNLDHHIRTRHYNDKPYKCDICDHRTTRKDSLEIHIRGLHLGEKPYECEFCGKKFSQKNDCRKHKVKHDSSWQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01472681;
- 90% Identity
- -
- 80% Identity
- -