Pmar013228.1
Basic Information
- Insect
- Paracoccus marginatus
- Gene Symbol
- -
- Assembly
- GCA_900065295.1
- Location
- FIZT01024553.1:7118-8671[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00076 0.06 14.0 5.0 3 23 117 137 116 137 0.97 2 10 1.4e-05 0.0011 19.5 1.3 1 23 142 165 142 165 0.93 3 10 6.8e-05 0.0054 17.3 2.3 1 23 171 194 171 194 0.98 4 10 1e-05 0.00084 19.9 0.1 1 23 221 244 221 244 0.96 5 10 9.4e-05 0.0075 16.9 4.3 1 23 250 273 250 273 0.97 6 10 0.018 1.4 9.7 0.3 3 23 290 311 289 311 0.95 7 10 4.1e-05 0.0032 18.0 1.5 1 23 315 338 315 338 0.97 8 10 0.0049 0.39 11.5 1.3 1 23 343 366 343 366 0.96 9 10 2.7e-05 0.0022 18.6 0.8 1 23 372 394 372 394 0.99 10 10 0.00016 0.013 16.1 4.2 1 23 400 422 400 422 0.96
Sequence Information
- Coding Sequence
- ATGGATGAGAGCAGTTTAGAAAACATCAAAATGGAAGATGCCAGTTATATTTTGCCCGAGGACATTAAAATAGAATTTATCGAACCTTTAGAAATggaaaccaaaattgaacaagAAACGATCGATGAAGACTTGAACGATCCTGTGGAATCCATTTCCGTTGCACCAGAGTTGTCAGATTCCAACAAATTGTTACCTGCTGACGCAGGACAACCACATTCTATAGAATCAAAATCTGAAGACGTTAAACCTTCCATCGACGACGTAAAGACGAATAATTTGTCGAAAAGTATTTCGCAACCAGTGCTTCGTAAACCTAAAAgaactccGAGAAGAGCATCTCGTATATGTCATTTGTGTGGTAAGCATTACAACACAGAGAGCGGTTTCAGACATCATTTAATTATGCACGAAGCTCCATCATACTCTTGCCACGAGTGCGGTCATGTTTTCTACgaagctcaaaatttaaagaagCATTTAGCGGCCATACATTCAGACGAAAGGCCATTCCAGTGTCATTTATGTGGTAGCAAGTATAAGAGGAAAGATGTCCTGCAAGAGCATATCAAACGTGTGCACGACGGTATTAAAAGAGTATGGAATGTGgaagctttgaaaaagtacAGAACGAAGCAACAAACCCAgaaaaagtataggtatacgtgcCCATATTGCGATAAAGTACTCGGAACTAAAGGATATCTGAACGATCACATTAATGGCGTCCATACCAAAGAGAAATTATATAAATGTAACGAATGCGAAATGTCATTCACTAGAAAAACCACCTTTAAGTACCATTTTAAGAGAGCtcatattttgaagaaaagtgTACTTGAACCTAGGGGAACGTTTTTGAAGGACTGCGAATATTGTGGACTAcaattccaaataaaaaaatactacgaACAGCACATAGCTTCCAAACACCTGCACACATTCAAATGCGCCTActgtgaagaaattttcgacaatAAATTCCAACTAACTAAGCACACAGATACCACCCACGCAGATAAAATTTTCCGCTGCGAATCTTGCAGTAAAGGATTCGCCGAAGAGTTACTTCTCAAGAGACACATCTATATTTGCCATTCCGATAGAAAACCCTACGAATGCCACGAATGCGGGTACAAAGCAAATAAAAAAGCTACGTTGGCTGTTCACATACGTAGGCATACAGGAGAAAAGCCCTATCACTGTGATCTGTGTACTAAACGCTTCACTCAGTCTGTCGATTTTCGTAAACACAGAGCTAATCACttcaataagaaaatttaG
- Protein Sequence
- MDESSLENIKMEDASYILPEDIKIEFIEPLEMETKIEQETIDEDLNDPVESISVAPELSDSNKLLPADAGQPHSIESKSEDVKPSIDDVKTNNLSKSISQPVLRKPKRTPRRASRICHLCGKHYNTESGFRHHLIMHEAPSYSCHECGHVFYEAQNLKKHLAAIHSDERPFQCHLCGSKYKRKDVLQEHIKRVHDGIKRVWNVEALKKYRTKQQTQKKYRYTCPYCDKVLGTKGYLNDHINGVHTKEKLYKCNECEMSFTRKTTFKYHFKRAHILKKSVLEPRGTFLKDCEYCGLQFQIKKYYEQHIASKHLHTFKCAYCEEIFDNKFQLTKHTDTTHADKIFRCESCSKGFAEELLLKRHIYICHSDRKPYECHECGYKANKKATLAVHIRRHTGEKPYHCDLCTKRFTQSVDFRKHRANHFNKKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00194638;
- 90% Identity
- iTF_01472640;
- 80% Identity
- -