Basic Information

Insect: Paracoccus marginatus
Gene Symbol: -
Assembly: GCA_900065295.1
Location: FIZT01042913.1:1-5995[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.003 0.24 12.2 0.8 2 23 62 83 61 83 0.96

2 16 5.3e-06 0.00042 20.8 4.9 1 23 330 353 330 353 0.97

3 16 0.31 25 5.8 0.2 1 23 371 394 371 394 0.93

4 16 5 4e+02 2.0 0.8 3 11 415 423 414 432 0.82

5 16 0.041 3.3 8.6 2.1 1 23 458 481 458 481 0.93

6 16 0.00036 0.028 15.1 1.4 1 21 499 519 499 520 0.95

7 16 0.0039 0.31 11.8 2.1 1 23 535 558 535 558 0.98

8 16 0.00038 0.03 15.0 1.1 1 23 573 596 573 596 0.98

9 16 2.5e-05 0.002 18.7 1.3 1 23 604 627 604 627 0.93

10 16 0.083 6.6 7.6 2.3 1 23 653 675 653 675 0.97

11 16 8.4e-05 0.0067 17.0 1.8 1 23 681 704 681 704 0.97

12 16 0.0023 0.18 12.5 3.9 1 23 710 732 710 732 0.98

13 16 0.00077 0.061 14.0 0.2 1 23 738 760 738 760 0.96

14 16 2.2e-05 0.0017 18.9 5.2 1 23 766 788 766 788 0.98

15 16 0.00026 0.021 15.5 3.7 1 23 794 817 794 817 0.97

16 16 0.00085 0.068 13.9 3.4 1 23 823 845 823 845 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.003	0.24	12.2	0.8	2	23	62	83	61	83	0.96
2	16	5.3e-06	0.00042	20.8	4.9	1	23	330	353	330	353	0.97
3	16	0.31	25	5.8	0.2	1	23	371	394	371	394	0.93
4	16	5	4e+02	2.0	0.8	3	11	415	423	414	432	0.82
5	16	0.041	3.3	8.6	2.1	1	23	458	481	458	481	0.93
6	16	0.00036	0.028	15.1	1.4	1	21	499	519	499	520	0.95
7	16	0.0039	0.31	11.8	2.1	1	23	535	558	535	558	0.98
8	16	0.00038	0.03	15.0	1.1	1	23	573	596	573	596	0.98
9	16	2.5e-05	0.002	18.7	1.3	1	23	604	627	604	627	0.93
10	16	0.083	6.6	7.6	2.3	1	23	653	675	653	675	0.97
11	16	8.4e-05	0.0067	17.0	1.8	1	23	681	704	681	704	0.97
12	16	0.0023	0.18	12.5	3.9	1	23	710	732	710	732	0.98
13	16	0.00077	0.061	14.0	0.2	1	23	738	760	738	760	0.96
14	16	2.2e-05	0.0017	18.9	5.2	1	23	766	788	766	788	0.98
15	16	0.00026	0.021	15.5	3.7	1	23	794	817	794	817	0.97
16	16	0.00085	0.068	13.9	3.4	1	23	823	845	823	845	0.97

Sequence Information

Coding Sequence: AGCGGTGCTGCGCTCGACGGCGAGAAATGGGATTCACTTATATTACCGCCACAACAGACATCGTCGCCTACGGCAGCCGCCGATGCTACGGCGACGTATGCCGAAGATCGTGCCAAATtggtgaaaagtaaaaaattaggcCCTCTGATGCGTAACTACAAAGGCGACGATATCGCCATGCTGGAATGCGATCAATGTACGGcattttttatcgataaaaacgattttgaaaaacatcgaaaGTTGCACGAGGATCGCGTCATTCTCAGgagcggcggcggtggcgccAGTCTTGGTGTCGAAATGAACTTCGTGAACAACCATACCAATTTGGGCAACCTCGCTAATGTGAATTTAAAACCCGAACCCGATCCTGTGCCTTTGAAACCGCGTGGCAGGAAGAAACCGTCTCCTAATTCTACCACTTCTGGTACCAGTCCGAGAGGATGGAGGAATTCAAGTcgacaaaaattacgaatcaAGTTGGGCGGTAACGTCGTCGTTAAAAAGactgctaaaaaattatttgctgGTAAATCACCTTCGAAAGATGTCTCAGTCCctgctgttgctgttgctgctgctgctgcgcCATCGCCACCTAAAAGAAGATCGACGAAAAATATCACCTACACAGAGTGCGAAGAAAGCGAAGGCGAAAACACGAGTAAAAGATATACGAAGCGTTCATTCGTCAACGATGAATACGAAATTCACATCACGAGAAgtaataacttgaaaaaacgtaGTCACTCTGAGGTGTCAGAGTGCGATGATACTGGTACCGATGACGATGCGAGAATCGAAAAAAGTGCAGATTTGCACATCGAAGTGATCGAAGAAACGGTCGTACCTGATCGAGCTGTCGGCAAAAAAGTCGGTCGAGAACGTAAAATCGTCTCAGACAGTGAACCAAAACGAAGGAAACCTCGCCTGAAGCGGCTGCGTCGCGCAACCGACGATGAGGAAGACAAAGGCCAGGCTGTCTATACATGCGCTCACTGTTTACGAAATTTCCGTCGAAAATCAAATCTAAAAAGGCACATGTCCAAGTTGCACTTGGGTAGGGAGACAGACGAGACTGGCGATTCGAGTAAGTGGTTCACGGGGTACTGTTGCGACGTCTGCGGCGAAGGTTTGCAAGTTCGGTCGATGATGATGGCTCATCGAGACGTCATGCATGGTAAATACCCGGAAATCGACTGGTGCAAGTATCAAACTTCACTGGCTCGAGTAAAATTCTGCAACGAGTGCAAGAAATACTTCCGAGGAGGTAAATTATTCGACGAGCATAGCTGCGACAAAGGTAAAAGTATCGTCGACGAAGAACTTGCCCGACTGATGAAAGAAGCAGAAGAAGTGAAACCCACATTTGTGTGTTTCATTTGTAACCAGTGCTTTAGATGGAAATGGGACTACAGGGCGCATCGAGAAAATGAACACAAAGACGCATCACCCATCGAATGGTCGTCGTTGAGACCTCTccctttggaattttattgcgAGAAGTGTTCCAAGGCGTTCTCGGACGAGGTCATGTTGAACAACCACCAATGCAGCGCAGTGCCGCAACAGTCGGCCAACGACGCTGTTGTCAAACCATTCCGATGCGAGCTTTGCGGCAACGACTACTTCTGGAAGTCTGACTTCCGACGCCATATGAGAACCAAGCATCCGAAAGAGAACTACAAACCTACCGAACACGATACCATCATTTACTCGTGCCCGTATTGCGAAGAAAAGTTCTCCATGAAGAAGCGTATCCTTAACCATATGCGTAAAGCTCACAACATCACCAGTGACTCGCCATTCGTGTGTGTGAAGTGCAACAAGGTGTTCAGAAGACGTGATAATCTCGACAGGCATAACGAATCCTATCATCCGACGTTGAACGATCAAGAAGAAGTTAACAAAATATTATCCGGAGCCGAGATCAAAATTAACGGCGAAATCGCCTACCATTGTGAAGTATGCAATCGTAACATCTCGAATTCTAATCGATTCATATCTCATTACCGTGGTCATTATTCGGAGAACAAGTTCACGTGCGATTTATGTGGCAAACAGGCGAAAACGCAGCACCAGCTGAATACTCACATTAAAAACATCCATCTTAACATACGTAACTACAAATGCGACCTTTGTAATAAGAGCTTTTACACGAAACAAGCGTGCGAAGAACACAGACGTATTCATACCGGCGAACGACCGTTCTCTTGCGAAATCTGCGGCAAAACGTTTGTTGCCGGAAACGCTCTAATATCGCATAAACGATTCCATAACGATTTCTTTCCCCATAGTTGTCACATGTGCCCGAAAAAGTTCAAAGTACGCAGATCGTTAATCAATCATATTCGAACGCACACAGGTGAACGTCCTTTCAAGTGCGACCTGTGCACGAAAACGTTCAACAACTCGTCCCAGTACTCGTACCATAAAAAAGTCACCCATTCCGAGAACCGTCCTTTTACATGTTCTCTATGCGGTAATTGTTTCAAAGCCAATAAGTTCTTGACGAGGCATATGGAACTGCACGCTGTTCGCAGCCAGATCCAGAGTCGTAAACCAAATAATCCAGCTCACTATACGACGTCACAAATGAAAACATCAACAGCAGCCGCACCCCAAACTGTTGCTAGTACAACGATGGTAGTCAGTCATCAGCAGCAGCCACCGATACCTCAGCCACACCAACCCTCCAGGGTGAACGCTGTAGAACAATCGGTTTCGACTGCACCCATTAGGACAGCGCAAGTGCAATCGGTTCAACACATTACTCCTACTACTGTCTATGTGAAAGATGTaaccgcgtcgtcgtcgttgtacaGAAACAACGATGCGGTATCAACAGCGATTTACAATTTGCAAAGAGGAGGAGGGTATGAGCAGAGTAGTGAAGAATTTGCCAGATCCGCTGCCGCTCCTGAGTGCGATGTCAACGCGATGAACAATGCGAAGAGAAATTTTACCGCGGCAGATGCTTACATGGCTGCTGCCAATTACGCCTTGGGTAACGATGATTATAAAACAAGCCCCAGTACAGTGAATGTGAATAGACCTTATAATCCGGCCGGCCCATCTTCCGGTAATCATCCTATTGCCACTGGCAAACACATGACGTGGTTATAG
Protein Sequence: SGAALDGEKWDSLILPPQQTSSPTAAADATATYAEDRAKLVKSKKLGPLMRNYKGDDIAMLECDQCTAFFIDKNDFEKHRKLHEDRVILRSGGGGASLGVEMNFVNNHTNLGNLANVNLKPEPDPVPLKPRGRKKPSPNSTTSGTSPRGWRNSSRQKLRIKLGGNVVVKKTAKKLFAGKSPSKDVSVPAVAVAAAAAPSPPKRRSTKNITYTECEESEGENTSKRYTKRSFVNDEYEIHITRSNNLKKRSHSEVSECDDTGTDDDARIEKSADLHIEVIEETVVPDRAVGKKVGRERKIVSDSEPKRRKPRLKRLRRATDDEEDKGQAVYTCAHCLRNFRRKSNLKRHMSKLHLGRETDETGDSSKWFTGYCCDVCGEGLQVRSMMMAHRDVMHGKYPEIDWCKYQTSLARVKFCNECKKYFRGGKLFDEHSCDKGKSIVDEELARLMKEAEEVKPTFVCFICNQCFRWKWDYRAHRENEHKDASPIEWSSLRPLPLEFYCEKCSKAFSDEVMLNNHQCSAVPQQSANDAVVKPFRCELCGNDYFWKSDFRRHMRTKHPKENYKPTEHDTIIYSCPYCEEKFSMKKRILNHMRKAHNITSDSPFVCVKCNKVFRRRDNLDRHNESYHPTLNDQEEVNKILSGAEIKINGEIAYHCEVCNRNISNSNRFISHYRGHYSENKFTCDLCGKQAKTQHQLNTHIKNIHLNIRNYKCDLCNKSFYTKQACEEHRRIHTGERPFSCEICGKTFVAGNALISHKRFHNDFFPHSCHMCPKKFKVRRSLINHIRTHTGERPFKCDLCTKTFNNSSQYSYHKKVTHSENRPFTCSLCGNCFKANKFLTRHMELHAVRSQIQSRKPNNPAHYTTSQMKTSTAAAPQTVASTTMVVSHQQQPPIPQPHQPSRVNAVEQSVSTAPIRTAQVQSVQHITPTTVYVKDVTASSSLYRNNDAVSTAIYNLQRGGGYEQSSEEFARSAAAPECDVNAMNNAKRNFTAADAYMAAANYALGNDDYKTSPSTVNVNRPYNPAGPSSGNHPIATGKHMTWL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -