Basic Information

Insect: Paracoccus marginatus
Gene Symbol: -
Assembly: GCA_900065295.1
Location: FIZT01049407.1:1199-5098[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.039 3.1 8.7 0.8 1 23 217 240 217 240 0.97

2 11 0.00057 0.046 14.4 0.2 1 23 280 302 280 302 0.98

3 11 2.9e-06 0.00023 21.7 1.6 1 23 378 401 378 401 0.97

4 11 0.00072 0.058 14.1 1.0 1 23 456 478 456 478 0.98

5 11 8e-06 0.00064 20.3 1.1 1 23 483 506 483 506 0.95

6 11 1.3e-06 0.0001 22.8 1.0 1 23 551 574 551 574 0.97

7 11 2.2e-05 0.0018 18.9 3.8 1 23 580 602 580 602 0.96

8 11 1.8e-06 0.00014 22.3 0.5 2 23 609 630 608 630 0.94

9 11 3.5e-06 0.00028 21.4 4.5 3 23 638 658 637 658 0.99

10 11 2.3e-06 0.00018 22.0 0.3 1 23 664 686 664 686 0.96

11 11 5e-05 0.0039 17.8 2.4 1 23 692 714 692 714 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.039	3.1	8.7	0.8	1	23	217	240	217	240	0.97
2	11	0.00057	0.046	14.4	0.2	1	23	280	302	280	302	0.98
3	11	2.9e-06	0.00023	21.7	1.6	1	23	378	401	378	401	0.97
4	11	0.00072	0.058	14.1	1.0	1	23	456	478	456	478	0.98
5	11	8e-06	0.00064	20.3	1.1	1	23	483	506	483	506	0.95
6	11	1.3e-06	0.0001	22.8	1.0	1	23	551	574	551	574	0.97
7	11	2.2e-05	0.0018	18.9	3.8	1	23	580	602	580	602	0.96
8	11	1.8e-06	0.00014	22.3	0.5	2	23	609	630	608	630	0.94
9	11	3.5e-06	0.00028	21.4	4.5	3	23	638	658	637	658	0.99
10	11	2.3e-06	0.00018	22.0	0.3	1	23	664	686	664	686	0.96
11	11	5e-05	0.0039	17.8	2.4	1	23	692	714	692	714	0.98

Sequence Information

Coding Sequence: ATGGAAACCGATGTTAAATCTGTAAACGTTGAGGTGAGTGAAGCTTTCATCGTGAAACCAGACGCCGACGAATTGTGCAGATTGTGCGCAAATACTGACAACCAATTGATTCCAATCTTCCGAGGGGAAGGTTTAGAACATAATCTTTCTCATAAGATTGAAACTCATCTTCCTATTATTAAGGTTACCGATGTCGATAAACTACCGTTACAAATTTGTTATCAATGTGCATCAACGTTAATTTCTTGGCACACCCTCTACGAAGGTTGTCGCGTTGCTGACAAAAGATTGCGCGAAATTTTATCCATCGATGAGAAATTACATCagGAGGACGAAACATATGGAGATTACGTTGATGATTATAGAGATGATTACGGCGACGAGACGCACGAATCCCTTCCTACCTCAACTCCTAATACCAGTAATTTAGAATCTAacactttaaaaaatAGCTCAACCGAACTAACTACATTAAGCGATACCAAAATACTCAATGAGACTGAATCTGATGGAAATGATGAAAGTGAAAGGGATGCGTTATCGTCCAAGAAGGTCGACGACCATAATTGGGTGGCAGCGTCCGCGATTAACGTATGCGATTGCGTTTTGAGTCTAGCTCGATGCGAAAGCTGCGTCCAGTTGAATAGATTCAAATGTTATTATTGTCCTatggtatttttaaaagtagaCGAACGTAACCGTCATTTGCGCGTTTCGCATCGCGAAGagttactgaaaaattcgttcgacttgttttgtaaaattggtcggaaaattgagaagaatGAAGAAGGTCGGGTGGATGAGGTATGTGATCGTTTTGCCGAGAGTAGACGATACGAATGTGATGAATGCGCAAATACTTTTTCAGATAAAGTTGCATTGATTGAACATTTCAAACGCCACCAAGATCTCGGTGAAGCTAGGCAgcgaatttgtaatttatccGGTAGCAACGCCACGAACGACGGTTTCGATCGTCACGAGTACCCTTCTGTTACCGTCTCGCTCAAACCTTCCCCTAAAGTTAAACGTAACCGAACTCCCAAAGCGTACGTACCGAGAAAAACGTCTAGTCGTTCTAAACCTGTATCATTTCCGCCTTCTCAAGCTCCTAGCAACAAAGTAACCTACGAATGCGCTCATTGTGGTACCAGTTTTAAATCCaaagtcgaaatgaaaaaacatttgagaTTAATTCACAACTTCGCCGCGCTAAAAATTTCCGATGGCGTTACCAAAAAACAAGAAGCCAAACTGATACGacaattggcgaaaaaatcattcaaacgGTCGGAAGTAGTCACACCGACGGTCGCGACATCGAACAACAACGTATCCGAATCTTCTTCGTCGGCCGGATACTATGTATGCGCCGTTTGCGGTcagatattcttgaaaaagcATTCGTTGACCAGACACCTGAACCTACACTCGTCCAGTCGATACGATTGCGACAAATGCAAGAAATCGTTCAAGACCAACGGCGCCTTACTATCGCATCAGAATCTTACTCATAAGAATCTGCCGAAAAATATGTTCTTCTTGAACGGTCGCAAGTATTTGAAATGCGAACAGTGCTCGTTTACCTGTCGCAACGAACGTAACAAAATGGAAGAACATATGCGAGTGCATACGGGCGAGAAACCATTCACTTGCGAACTATGCGGTAAACAGTTCCGCACCAAGGGTCTGCTCCGAGTACATACTAGGTACGTTCACGAAGGTGTGAAAGAGCACGCGTGCGATATCTGCGGTCGATGTTTTTCGAACAAGAGATACATGGAGGAGCACAGGCGTATTCATACCGGTGAGAAACCGCTGATATGCGATTTGTGCGGCAGGACGTTTCGTCAGAATTCGTCGCTCACCAAACACGTCGAGAATCATTTGGGCATTAAAAGGCACGGATGCCAGCTGTGCGGTAAACGATTCTCGAATAGTCATCATTTGAATATACATATTAGAAGGCATATGGGCGAGGCGAATTACGTCTGCGATCAGTGCGGTAAAGGCTTCGTCGATCAGTACCagctgaaaaatcataaagtCGTGCATTCGGAAGAGAGACCTTTCGTGTGCGTTGATTGCGGGACCAGGTTTAAGCTTTTGAAACATCTCAAACAGCATGGGAGAACGCACAAGacgggttga
Protein Sequence: METDVKSVNVEVSEAFIVKPDADELCRLCANTDNQLIPIFRGEGLEHNLSHKIETHLPIIKVTDVDKLPLQICYQCASTLISWHTLYEGCRVADKRLREILSIDEKLHQEDETYGDYVDDYRDDYGDETHESLPTSTPNTSNLESNTLKNSSTELTTLSDTKILNETESDGNDESERDALSSKKVDDHNWVAASAINVCDCVLSLARCESCVQLNRFKCYYCPMVFLKVDERNRHLRVSHREELLKNSFDLFCKIGRKIEKNEEGRVDEVCDRFAESRRYECDECANTFSDKVALIEHFKRHQDLGEARQRICNLSGSNATNDGFDRHEYPSVTVSLKPSPKVKRNRTPKAYVPRKTSSRSKPVSFPPSQAPSNKVTYECAHCGTSFKSKVEMKKHLRLIHNFAALKISDGVTKKQEAKLIRQLAKKSFKRSEVVTPTVATSNNNVSESSSSAGYYVCAVCGQIFLKKHSLTRHLNLHSSSRYDCDKCKKSFKTNGALLSHQNLTHKNLPKNMFFLNGRKYLKCEQCSFTCRNERNKMEEHMRVHTGEKPFTCELCGKQFRTKGLLRVHTRYVHEGVKEHACDICGRCFSNKRYMEEHRRIHTGEKPLICDLCGRTFRQNSSLTKHVENHLGIKRHGCQLCGKRFSNSHHLNIHIRRHMGEANYVCDQCGKGFVDQYQLKNHKVVHSEERPFVCVDCGTRFKLLKHLKQHGRTHKTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -