Pmar014140.1
Basic Information
- Insect
- Paracoccus marginatus
- Gene Symbol
- -
- Assembly
- GCA_900065295.1
- Location
- FIZT01009943.1:1094-2924[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00073 0.058 14.1 0.7 1 23 104 126 104 126 0.96 2 12 0.0003 0.024 15.3 0.2 1 23 130 152 130 152 0.95 3 12 2.2e-05 0.0018 18.9 3.6 1 23 159 181 159 181 0.98 4 12 0.02 1.6 9.6 1.9 2 23 189 210 188 210 0.91 5 12 2.2e-06 0.00017 22.1 2.3 1 23 216 238 216 238 0.98 6 12 4.1e-05 0.0033 18.0 1.6 1 23 244 266 244 266 0.96 7 12 0.0011 0.085 13.6 2.9 1 23 271 293 271 293 0.96 8 12 2.1e-05 0.0017 19.0 0.9 1 23 299 321 299 321 0.99 9 12 1e-06 8e-05 23.1 1.4 1 23 327 349 327 349 0.98 10 12 4.1e-07 3.3e-05 24.3 0.3 1 23 355 377 355 377 0.99 11 12 1.4e-05 0.0011 19.5 2.4 1 23 383 405 383 405 0.97 12 12 0.00017 0.014 16.1 2.6 1 23 423 445 423 445 0.97
Sequence Information
- Coding Sequence
- ATGTCTTCAAGTTTCTTTGAGACAGAAGAGACAAATGTCCTTAACGATCCTCCTGTAATTCATCCAACAGCGAGTATATTTTTCGAATGCCCTGATGAAGAATCTCTGACAAATGCCTTATTCATTGAAACCGAGTCAGTAGATCGTGATGAAGACGAACTCGGACAAAAGTCAAGAACTTTATCGCAGAATAACAGAATTATTGAAGCTGACGACGACAACTCAAATTCACATGATACAAACCCCTACATAGGATTaaccatcaaaaataatttcaaaaaattactaaattctTCTCCTCAAAACAAGCATGTTTGTGAATTTTGccaggaaaaattcaacgaaaaagcTACTCTACGAGAGCACATCTTGGCCCactcgaaaacatttttttgcgtCATCTGCGGGGAAACTTTTGCCAATCAGCTTGACTTGACATATCACGAACAACAGCATATCGCGGAAAagagtaaatatttttgcacCGTGtgtcgtaggtattttttcacgcGAGGAAATCTAAATCGTCATATGAAATCGCACGTAGGTAGACCAGGGTTACACATTTGCATAGAATGTAATTTATCCTTCACggatgaaaagtttttaacgAAACataacaaaattcatttttcggaaaattcttACACATGCCACGACTGCGGTAAGACGTTTTAtacaaaaaaccaaataaTTCGTCACGTCAGCGTTCATCGGCATCAATCGAAATTCGAGTGTAAATATTGCCTAAAATCATTTGTTCATGAGAGTAGTTTAACTGTACACGAACTATTGCATTCGAGCATAACATACACTTGTAAATTTtgctttagaaatttttcttttcagtctAATTACATAGTTCACGAACTCCAACACACCAACAAGTCCCCTTTTCAATgtccattttgtaaaatttcattcgtcgAAAAGAAAACGCTTGTAATTCATTTACGAAAACATCTCGATGAAAAACCGTACGCTTGCGACAAGTGCGCAAAAACTTTCACACGCCAAGCTACTTTGATCAAACATCAAAAACGTCACAGCGAAGATCGACCGTTCAAGTGTCCAAAATGCGACAAAACCTTTCCGTCCAATGATACGCTAATACCTCACATGCGAATTCACATGAAAGATAAACCTTACGCTTGCGATCGTTGCGACAGAAGATTCAGACAGCAGAGAACTctacaaaatcataaaaaggTTCATctagaaaccaaaaaaaatgctccaaatgCTCCAAATGATATAGTGAACGTACACAGTTGTACTCAGtgtgaaaaaacttttggtaaCGTTCCATCGTTGCAACATCACATGATATCTCACATGCCGAAAAAAACCGAACAGTTCATCAGCGGTTTGAAAACAAGGTTCAAATCGTTATTGCATTCTCACGAAGTTAAACAAATTAATGGCGATTCTgcgacgaataaattttcatctgcgGTCAACAAATTCgagGCCGATTCATGTTTGACCCCGGAAATTCAAACGGATGCCAATGGCGTTAGTGGTGCAATACTTTCTAAATGTATCAAAGAGGAAGACGAGATTTCAATCAAGAGCGAACAGGGTAGCGTTTGA
- Protein Sequence
- MSSSFFETEETNVLNDPPVIHPTASIFFECPDEESLTNALFIETESVDRDEDELGQKSRTLSQNNRIIEADDDNSNSHDTNPYIGLTIKNNFKKLLNSSPQNKHVCEFCQEKFNEKATLREHILAHSKTFFCVICGETFANQLDLTYHEQQHIAEKSKYFCTVCRRYFFTRGNLNRHMKSHVGRPGLHICIECNLSFTDEKFLTKHNKIHFSENSYTCHDCGKTFYTKNQIIRHVSVHRHQSKFECKYCLKSFVHESSLTVHELLHSSITYTCKFCFRNFSFQSNYIVHELQHTNKSPFQCPFCKISFVEKKTLVIHLRKHLDEKPYACDKCAKTFTRQATLIKHQKRHSEDRPFKCPKCDKTFPSNDTLIPHMRIHMKDKPYACDRCDRRFRQQRTLQNHKKVHLETKKNAPNAPNDIVNVHSCTQCEKTFGNVPSLQHHMISHMPKKTEQFISGLKTRFKSLLHSHEVKQINGDSATNKFSSAVNKFEADSCLTPEIQTDANGVSGAILSKCIKEEDEISIKSEQGSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -