Pmar018201.1
Basic Information
- Insect
- Paracoccus marginatus
- Gene Symbol
- -
- Assembly
- GCA_900065295.1
- Location
- FIZT01034785.1:3550-5898[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0057 0.45 11.3 5.6 1 23 113 135 113 135 0.98 2 19 6.7e-05 0.0053 17.4 1.7 1 23 140 162 140 162 0.98 3 19 0.0044 0.35 11.7 1.0 2 21 173 192 172 193 0.93 4 19 0.0098 0.78 10.5 1.0 1 23 198 221 198 221 0.97 5 19 0.16 12 6.8 0.1 2 23 261 281 260 281 0.79 6 19 3.4e-07 2.7e-05 24.6 0.9 1 21 287 307 287 308 0.95 7 19 0.00018 0.014 16.0 0.6 1 23 315 337 315 337 0.98 8 19 0.00011 0.0087 16.7 0.3 1 23 347 370 347 370 0.98 9 19 0.029 2.3 9.1 0.7 2 23 379 401 378 401 0.90 10 19 0.0001 0.008 16.8 1.0 1 23 409 432 409 432 0.98 11 19 0.11 8.7 7.3 0.0 2 23 464 486 463 486 0.94 12 19 0.0042 0.34 11.7 0.1 1 19 516 534 516 536 0.94 13 19 1.4e-06 0.00011 22.6 1.3 1 23 546 568 546 568 0.98 14 19 0.00018 0.014 16.0 0.4 1 20 577 596 577 598 0.96 15 19 0.55 44 5.0 0.5 3 23 602 623 601 623 0.93 16 19 0.0022 0.18 12.6 2.1 1 20 668 687 668 688 0.96 17 19 6.1e-05 0.0048 17.5 4.0 1 23 696 719 696 719 0.97 18 19 0.0027 0.22 12.3 1.7 1 23 724 746 724 746 0.95 19 19 0.3 24 5.9 1.0 5 21 755 771 754 772 0.92
Sequence Information
- Coding Sequence
- TTGCCTCCGACGCCGGCCACCGCTGACTTACTCGCCGAGTTACAAACTGCTGAGGAGAATGACCGTAGCGCCAATCTAGATCTTAGGTGTGCTGTGTGTTCAAATATCGGTTTTAACGGTCGAATAATCGGCGATCAATACGTTTGCGAACTTTGTTGCAAAGTGAAGCTCGAATCGAACGACGATGAGCAATGGACTTACAACGACGATTCGACTACAGTCACCAGTGGTGATCAGTTCGATCATACTGACGCATCTTATCAGCTATCCGAAAAAATGACGGCCATCGAGGGTGACGTCGATTTGGCGGCCATGAAAACTCTGCCCGACGAGAAATACCAGTGCGCGCTTTGTCACAAAGTATACTGCAAGAAGAAGAGTATGATAAATCACGTGAAAAACCATAATAAAAAAGTATTCCCTTGTAATGTATGCAACAATAATTTTCGCACTCTTGCGCAGTTGAAAACGCATAGGAAACGACACGTACGTAAATCGTTGAATAATACTTTGATATATTGCGAAGTTTGtaaaaagtatttcaaaacCAAGAAAGGATTCGCTTACCATCAGCAAAAAATCTGTATTCAATATAAGTGTTACatttgcgacgaaaaattcttGGTGCATTCGGTGCTAATGGATCATATGCGCAATGTACACGACGACGCGAAGAAAACAACGCCCGGCAGTGCTACATTAACGAATGACGCCGAGGCGATGGGTTTAGTCTTAGCTATGCCTTCAACTCCGGCCAACGATAATGAAACCGTGATGAGCGTTTGTCCAATTTGCCATAAGGTGGTCACGCAGGCTGTATTGCCACGGCATATGATATTGCATTCGGAAGATAAACCTTTCACGTGTGACATGTGTGGCAAATCGTTCAAAAGAAAGCATTCGCTTCAGGACCACATTATGATCGAGATGGGTATGAAGAATTACGTTTGCGACATCTGCGGCATGAAGTTTCTCAAGCAAGGTTACCTGAACAAGCACGTACGGTATCATCAGCTGAATAACGGCGAATACCAGGGTTTTCGGTGCGAAATGTGTGGCAAGAAGTTTCCGGAGAAGTGGCGTTTAGGCGTGCATCAGCGATCGGTGCATAAAGGTGGTCGATTTTCGTCCTGTAAGTGCGACATCTGCGGCAATATGTTTGCCGAAAGGTGGATGGTACGCAGGCACAAGGCGCAAGAACACAACGGCGAAGAATTCAAAGAATACCAATGCGACGTTTGcggtaaaaaattccaagagaAGTGGATGATCAGGTCTCATCAAAGGAGTACCCATAAAAGCGgcgtcaaaaaaatgtactgcGAATTGTGCGGCCGTAGCGATCATCTGCAGAAAGACTGTACTCATAGGCACGCCATTCAGGAAGTCACTTGCGAATTATGTGGCGAAATACTTCAGTCGAATTTCGCTCTAAAAGAGCACGTAACGTCGGCGCACAATTTCGATCACATCGTTGATAATAAATGCGATCGTTTCGACGAGCCGCCTTCAACGGAAGAGcacgatttcgataaaaaagttCTCCATATATGCGCCGGCTGCGGTAGGCAATTTCCCGACAAGCTGCAGCTAAGACAACACGAAGTCGCCGCCAACTGCGTCCAAGAGTGTAAATACGAATGCGTGGAATGTGGCAAAGTATTCCACTCCAAGTCTAGCCTCAGTAATCATCTGATGAGCCACAAAAAGGCCAGCATTCCGACCATGTTCAAGtgcgaattttgtaaaaaagagTTCAGAAGCAGCGAAGCCCTCGATAGTCACATGTCCGGCGATAAGTTATGCCTTCTTTGCGGTAAAGTATACCCTTGCGACGATCAACTGCGCAATCACGTGTATAAAgtacacgacgacgaagacgacgattgTCGTCCGCCAGTCAAGAGATCGCGATCTTCGGTCGCGCCACAAAACGACGATTGGTTGCAAGACGAGACTGAAACGGACAAGGGCTCGACGGCGGTATCGTCCGATAAACCCTTCGAATGTCGGTTgtgtcataaaaaatttgctcgCAAACAGgcgatgaaaaatcatctatACGCCGAGCTCAACTTGAGAAGGCACGAGTGCGAATTTTGCGATAAaagttataattattattcgcaCTTGAAAGAGCACATTATCACGAATCATGGCGAGAAAGAGTACGCTTGCGTTCACTGCGGAAAAGATTTCCCAACGAGGAAACGATTCAGAGATCACGTGACGCTACACTTGGAGGATAAACCATTCCTCTGCGTGTGCGGATTATCATTTAAACTCAATAGGTATCTGAGTAAAcataagaaaaaatgtaaagtcacggtaaaaaaagaaattgaatag
- Protein Sequence
- LPPTPATADLLAELQTAEENDRSANLDLRCAVCSNIGFNGRIIGDQYVCELCCKVKLESNDDEQWTYNDDSTTVTSGDQFDHTDASYQLSEKMTAIEGDVDLAAMKTLPDEKYQCALCHKVYCKKKSMINHVKNHNKKVFPCNVCNNNFRTLAQLKTHRKRHVRKSLNNTLIYCEVCKKYFKTKKGFAYHQQKICIQYKCYICDEKFLVHSVLMDHMRNVHDDAKKTTPGSATLTNDAEAMGLVLAMPSTPANDNETVMSVCPICHKVVTQAVLPRHMILHSEDKPFTCDMCGKSFKRKHSLQDHIMIEMGMKNYVCDICGMKFLKQGYLNKHVRYHQLNNGEYQGFRCEMCGKKFPEKWRLGVHQRSVHKGGRFSSCKCDICGNMFAERWMVRRHKAQEHNGEEFKEYQCDVCGKKFQEKWMIRSHQRSTHKSGVKKMYCELCGRSDHLQKDCTHRHAIQEVTCELCGEILQSNFALKEHVTSAHNFDHIVDNKCDRFDEPPSTEEHDFDKKVLHICAGCGRQFPDKLQLRQHEVAANCVQECKYECVECGKVFHSKSSLSNHLMSHKKASIPTMFKCEFCKKEFRSSEALDSHMSGDKLCLLCGKVYPCDDQLRNHVYKVHDDEDDDCRPPVKRSRSSVAPQNDDWLQDETETDKGSTAVSSDKPFECRLCHKKFARKQAMKNHLYAELNLRRHECEFCDKSYNYYSHLKEHIITNHGEKEYACVHCGKDFPTRKRFRDHVTLHLEDKPFLCVCGLSFKLNRYLSKHKKKCKVTVKKEIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -