Pmar013598.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Paracoccus marginatus
Gene Symbol
-
Assembly
GCA_900065295.1
Location
FIZT01017614.1:3411-6011[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.00039 0.031 15.0 0.9 1 22 313 334 313 337 0.90
2 18 0.057 4.5 8.1 7.1 1 23 351 374 351 374 0.97
3 18 0.0039 0.31 11.8 3.3 2 23 379 400 378 401 0.94
4 18 2.4e-05 0.0019 18.8 3.1 1 23 414 436 414 436 0.99
5 18 0.0024 0.19 12.5 4.4 1 23 440 462 440 462 0.97
6 18 2.5 2e+02 3.0 0.4 2 23 469 491 468 491 0.88
7 18 6.3e-05 0.005 17.4 4.2 3 23 499 520 499 520 0.97
8 18 0.00043 0.034 14.8 1.6 2 23 532 554 531 554 0.95
9 18 4.8e-06 0.00038 21.0 2.4 3 23 561 582 560 582 0.98
10 18 0.0025 0.2 12.4 4.1 1 23 588 610 588 610 0.98
11 18 9.7e-06 0.00077 20.0 0.8 1 23 616 638 616 638 0.98
12 18 8.8e-06 0.0007 20.1 2.1 1 23 644 667 644 667 0.97
13 18 0.00072 0.057 14.1 1.3 1 23 671 693 671 693 0.92
14 18 9.9e-06 0.00079 20.0 2.0 1 23 705 727 705 727 0.99
15 18 7.6e-05 0.0061 17.2 1.8 2 23 732 753 731 753 0.97
16 18 6.3e-05 0.005 17.4 1.0 2 23 760 782 759 782 0.96
17 18 0.0057 0.45 11.3 1.4 1 23 788 810 788 810 0.97
18 18 0.00063 0.05 14.3 1.7 1 23 816 839 816 839 0.92

Sequence Information

Coding Sequence
TTGGGAAATCCAAGCAGTACCTCACAACATGACCAAATTACTTCTGATCCAATCCCAGCTACCGTCACTAGTGATACGAATGTTGAACTGGACAATGCAGATCGTTCAACGCAAAATGAAACGATTCAATCGTCGGAAAAATCATCACACGACGATAGTGAAATCCGCGATGAAACTTTCGTGAGCTCTGAGGATCCCAACCGTGAGAATACAATTCACCATCAGAATGGTACTCCTCTAACGGTAGAAGACGATCCAATCCACTCCGCTAACGCTACTGACGATGACATCTCCCAAGATGTAGTAGAGTGCGAATCTAACTCGTTGAAGGAATCAGTTAACCAAGAAGTAAGTTTGCCGCTTCACACTCGTGAAGTTGACGATAAAACTTCTACTCTTTCTAGTCATTCTCACGGTCAAATCGAGACCAATCACGAGAACGTGCCTTGTTTCGTCGACTGTGATCTTCATTATAATGtttccaaaactgaaattaaaaacgtatGTGATACTGTGGAAAACGATAAGAACGTAGTTGATCAAATGAACGATTCgtttaatgagaaaattcacgATGAGCTTTTATTACAAAGCAGCGAGGATGAAGTGGAAGTCAGCTGTAGGTCTGGCGATAGTGATGCATGTAACGAAAATGTTGCTTGTTCGTCCTCAAATAACATTATCAGTTGTGCGGAAGACGCTGAAGAAATCTTGACTGAAATCGAATCAAATACGATAGACGAGTTGGCAAAAGAGGCTCAGCGCGGTTGTCTCGGTACCAGTCAAAGTTTCACGAATGGCAACTGTCCTAAATCTAACGACGAATACGAAGACTTTGAAGAAATCTCAATCGAAATCGACCTAGATCCGAAGACAGAACTGGTAAATCTAAATCATCGGAAAAATAATACGACGAATAAAACATTGAAGAAACCATTCAGTTGCGGAAAATGCGACAGAACATTCGACAGTCGAAGAGGTTTGCGTATTCATGAAAAAAGCAAATGGCACGGACGACGTAGACTCGGACTAGGATCTGGACCGTTGAAGTTTAAATGCGACAAATGCGAATTCCGCGCCAAACACAAGCATAATCTATTTTACCATATTCAATCTCGACACACCAGTTCGACAGTTTGTCCAACCTGTGGTAAAGTTTGCGACAATTATatggtgttgaaaaatcaccggcAACGTCATCACACTCACCCAAGGGCGAGTTCTGCCGGTAAAAAGGTGTACACTTGCAATATTTGTCAGAAACGTATCTCGCATAAAACAACGTTGAAAGCGCATATTCGCAATCATTCCTTCGTTCATAAATGTAAACACTGCGGCAAAGGATTCGCTTCGGAGATAGGATTACATTTACACGAACGATTTCATACTTcgaaaccaattttgaaatgcgATAAATGTGATTTCACCGCGCGAATCCGTAGAGTCGTTAACGAGCATATGCTGAGTCAGCACGGTACAGAAGGTTCTATAGGTTGCCATTTGTGCGGCGAATGCTTCACGAGTAAATCTTCTCTGTTGGTTCATCGTCGACAGGTTCACGATGGGTGTAAGAGATTTAAATCTGAACCTATGGTTTGTAACGATTGTCAGAAATCTTTCTGGTCGCGAGATAGTCTCAAGCAACACATTCACGTTAGACATATACGAGAACCATCGCTTTGCAATATCTGCGATAaaacgttcaaaaataaattctatcTTAGAATGCATATTAAAAAAAGTCACACCTCTTCGAAAGAATATACTTGCGAGATATGCGATTACAAGTGTAAGACAAACACACGTCTGCAGGATCATTTCAAAGTGCATATTGGAGGAGAGCAATTCGTTTGCGGAGCTTGCGGTAGGAGTTTCTTACGCAAGAGTAGTTTACAAAATCACCAACGTACTCACGAAGAAACTGGAGAGTTTGTTTGCGACCATTGCCAAAAAAGCTTTCGATTGAAAGTAAACTTGAGAGAGCATATCATCAAAAGCCATACTTACAAATATAAATGCGAGAAATGTGATAAACGTTTTCCCACTGAGGCGGAATTCTATTCGCACGATAACACTCATACAGCCGACGGTAAGATGGTTCCACCGAAGAAGTACGTTTGCGAGATTTGTGGCAGAGCCTGTCGTACTGAATTCCACTTGGTTTCGCATCAACGCGTTCACACCGAACCGTCCCGCTGTAACCTCtgtgaaaaaactttcagtaCGAGGGACCGGCTGAGGTACCACGTTCTCACTCATGGTGGTGATGAAAAGCTTCCTTGCGAAGTATGCGGCAAGACTTGCCCTAACAAGTTCGCTTTGAACTCGCACCGGAAGAGGGTTCACGAAACACAGAAACTATTCGCGTGTGAAATATGCGATTATGGGTGTAGATCGTTGCAATTATTGACCGATCATTTCAACAAGCATACTGGTGAAAAACCGTACTGTTGTGAGATATGCAATGTTAGCTATTCTACTAAGAATGCCCTGAAAGCGCACAAAGGTTCTTATCATTCAGCTGTTCAGGCTTCGAATCGGTCCAAATTACCCACTACTTACCAGCGACCTACGATTGTTGAAACAATTACCTTAGATTAA
Protein Sequence
LGNPSSTSQHDQITSDPIPATVTSDTNVELDNADRSTQNETIQSSEKSSHDDSEIRDETFVSSEDPNRENTIHHQNGTPLTVEDDPIHSANATDDDISQDVVECESNSLKESVNQEVSLPLHTREVDDKTSTLSSHSHGQIETNHENVPCFVDCDLHYNVSKTEIKNVCDTVENDKNVVDQMNDSFNEKIHDELLLQSSEDEVEVSCRSGDSDACNENVACSSSNNIISCAEDAEEILTEIESNTIDELAKEAQRGCLGTSQSFTNGNCPKSNDEYEDFEEISIEIDLDPKTELVNLNHRKNNTTNKTLKKPFSCGKCDRTFDSRRGLRIHEKSKWHGRRRLGLGSGPLKFKCDKCEFRAKHKHNLFYHIQSRHTSSTVCPTCGKVCDNYMVLKNHRQRHHTHPRASSAGKKVYTCNICQKRISHKTTLKAHIRNHSFVHKCKHCGKGFASEIGLHLHERFHTSKPILKCDKCDFTARIRRVVNEHMLSQHGTEGSIGCHLCGECFTSKSSLLVHRRQVHDGCKRFKSEPMVCNDCQKSFWSRDSLKQHIHVRHIREPSLCNICDKTFKNKFYLRMHIKKSHTSSKEYTCEICDYKCKTNTRLQDHFKVHIGGEQFVCGACGRSFLRKSSLQNHQRTHEETGEFVCDHCQKSFRLKVNLREHIIKSHTYKYKCEKCDKRFPTEAEFYSHDNTHTADGKMVPPKKYVCEICGRACRTEFHLVSHQRVHTEPSRCNLCEKTFSTRDRLRYHVLTHGGDEKLPCEVCGKTCPNKFALNSHRKRVHETQKLFACEICDYGCRSLQLLTDHFNKHTGEKPYCCEICNVSYSTKNALKAHKGSYHSAVQASNRSKLPTTYQRPTIVETITLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-