Basic Information

Insect: Paracoccus marginatus
Gene Symbol: su(Hw)
Assembly: GCA_900065295.1
Location: FIZT01019309.1:10814-13796[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.6e-05 0.0013 19.3 0.4 3 21 44 62 42 63 0.95

2 13 0.57 45 5.0 0.1 1 23 144 167 144 167 0.93

3 13 0.00074 0.059 14.1 2.8 1 23 173 195 173 195 0.98

4 13 1.1e-05 0.00091 19.8 0.5 2 19 203 220 202 223 0.93

5 13 2.1e-07 1.7e-05 25.2 0.6 1 23 234 256 234 256 0.97

6 13 0.036 2.8 8.8 0.7 1 23 266 288 266 288 0.97

7 13 3.5e-06 0.00028 21.4 3.1 1 23 294 316 294 316 0.96

8 13 0.00051 0.04 14.6 0.6 1 23 322 344 322 344 0.98

9 13 6.3e-05 0.005 17.5 3.3 1 23 350 372 350 372 0.95

10 13 3.5e-05 0.0028 18.3 0.8 1 23 378 401 378 401 0.97

11 13 1.1e-05 0.00084 19.9 0.3 1 19 407 425 407 429 0.95

12 13 3.9e-07 3.1e-05 24.4 0.8 1 23 435 457 435 457 0.98

13 13 6.7e-07 5.3e-05 23.7 2.0 2 23 464 486 464 486 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.6e-05	0.0013	19.3	0.4	3	21	44	62	42	63	0.95
2	13	0.57	45	5.0	0.1	1	23	144	167	144	167	0.93
3	13	0.00074	0.059	14.1	2.8	1	23	173	195	173	195	0.98
4	13	1.1e-05	0.00091	19.8	0.5	2	19	203	220	202	223	0.93
5	13	2.1e-07	1.7e-05	25.2	0.6	1	23	234	256	234	256	0.97
6	13	0.036	2.8	8.8	0.7	1	23	266	288	266	288	0.97
7	13	3.5e-06	0.00028	21.4	3.1	1	23	294	316	294	316	0.96
8	13	0.00051	0.04	14.6	0.6	1	23	322	344	322	344	0.98
9	13	6.3e-05	0.005	17.5	3.3	1	23	350	372	350	372	0.95
10	13	3.5e-05	0.0028	18.3	0.8	1	23	378	401	378	401	0.97
11	13	1.1e-05	0.00084	19.9	0.3	1	19	407	425	407	429	0.95
12	13	3.9e-07	3.1e-05	24.4	0.8	1	23	435	457	435	457	0.98
13	13	6.7e-07	5.3e-05	23.7	2.0	2	23	464	486	464	486	0.97

Sequence Information

Coding Sequence: ATGGCTGCCGAcgatatttataattttaatgctGAACTCGAAGATGGAGataaaaaagtaactaaaagcaaaagaaaatcgatcagGTTGGGTGACATCGCAGACatccaaattaaaaaagaattcggCTGTGATAATTGTGACAAAAGTTTCACCACTTTATCGGGGTTGAAACGTCATACAAAAgcatgtgaaaaaataaaggaagAAATAGAAGACGTACCAAATGAATCAGGAGAGGGTGGTAATGACGAACCTATGGAAAGCGACGTTTATATTTTACCCACTGACATTGAGCAAAACGGCACCAAGAGCGATGTGATGAGCATGACTAGCTTTATAAACAGTAACGGTATCAGCTCCTACATTCAACCTGGAAAGTGTGATTGTTGCGGAGAACACGCAGATACAGCTCATATGgaaggAGCGTTTTCTTGCGAAGAGTGTATGTTTTTGTTTACCACCGAAGTAGCTCTAGGCCGTCATCGCATTTTAGTTCACAACGAAGGAGAAACATACAACTGTAGTAAATGCGACGTAAAATGTCCCGATAAGAAAATGCTGCGTTATCATTTACGAATTCACAACCCCaATTTCAAACCAGTATCGTGCCCGGTTTGTAACAAAGAATTCAGTAGAAAGTATCACTTAGTTCGTCACAATATGCAAACCGGTTGCGACGGTTCGGAAAGACCAACCTTTCCTTGTCAGgTTTGTCAACGAGTCTTTACCAGGAAGGATAATCTGCGCGAACATCTTCGCGCTCATGCCGGTCAAACAAAACGTAAACAGAAATATACTTGCGAGTATTGTTCCCAAGAGTTTGCTGGAATGTTTGTATTGAAtcagcataaaaaattacacttagGTGATAAACCACACGCGTGTGATAtgtgcgagaaaaaattctctaccaGTGGAGCTCTGAAAAAACATCGTCGTAAGCATACCGGCGAAAGACCGTACGAGTGTAAACAGTGCTTGGCCAAGTTCGCTGCCAAAGAAACGCTCAACCGGCATACTCGTATTCACACCGGCGTTAAACCTCATACTTGCCTGTTTTGCGGTAAAAGTTTCATCCAAGCGACGCAACTTCGAGCTCACATCTTCCATCACACTGGAGAAAATGGATACACTTGCGATCAGTGTGGTAAAGCTTTTAACAGGCGTACTCGTTTAGATCTACACATCAAGTACGTACACGAAGGAGCAATACCTTTCGATTGCGAAAAATGTGGTAAATCGTTCATCCGTAAAGAAGATTTGGCTCGACACGATATTTTGCACTCGGGCGtcaaagCTCACAAATGCCCGATTTGTGATAAAGGATTTGCTATGAAATCGTCGTTGAAGATACATCTTCTAACTCACACTAAGGAACCGCCTCGTTCGTGCGACGAATGCGGGCGTGCTTTTATACGTCAAGATTGCCTACTACGTCATATGCGAACAAAGCATCGTGAAATGTTGGAAGAAATAATGGCCGAGGCCGAGAAAAAGAAACTGCAAGCTCAGTTATTAGCAGTAGCCGCAGCCAGCACCAACGACGAAGAAACCGAATCGCCCGAAAGTTCGGAATTCCACACTTATCTGCCGGACGACGCACTGACCGAGTCCATCGGCGAATTGTTAACCATGTTGGTAGACGAAGCCACCCTTAAATCTTTCGGTTGGCCTTCCGCTTCAGTCGATAAATTATTAGAATCCGTTATCAAGAGATGCGGTCATAGTCCGGCTACAGCTGATGAGCTACCTTATCCAGATTGTTTGAGGGAGAATGCCAAATTATTGTTTACCGTAGTTATTGATGATTCGGCTGTGAAAACTTTGCTGAATAATCAAACCGTCGACGAAGTTATTTTGCACGTTTTAAAATTAGCGAAAACGTGA
Protein Sequence: MAADDIYNFNAELEDGDKKVTKSKRKSIRLGDIADIQIKKEFGCDNCDKSFTTLSGLKRHTKACEKIKEEIEDVPNESGEGGNDEPMESDVYILPTDIEQNGTKSDVMSMTSFINSNGISSYIQPGKCDCCGEHADTAHMEGAFSCEECMFLFTTEVALGRHRILVHNEGETYNCSKCDVKCPDKKMLRYHLRIHNPNFKPVSCPVCNKEFSRKYHLVRHNMQTGCDGSERPTFPCQVCQRVFTRKDNLREHLRAHAGQTKRKQKYTCEYCSQEFAGMFVLNQHKKLHLGDKPHACDMCEKKFSTSGALKKHRRKHTGERPYECKQCLAKFAAKETLNRHTRIHTGVKPHTCLFCGKSFIQATQLRAHIFHHTGENGYTCDQCGKAFNRRTRLDLHIKYVHEGAIPFDCEKCGKSFIRKEDLARHDILHSGVKAHKCPICDKGFAMKSSLKIHLLTHTKEPPRSCDECGRAFIRQDCLLRHMRTKHREMLEEIMAEAEKKKLQAQLLAVAAASTNDEETESPESSEFHTYLPDDALTESIGELLTMLVDEATLKSFGWPSASVDKLLESVIKRCGHSPATADELPYPDCLRENAKLLFTVVIDDSAVKTLLNNQTVDEVILHVLKLAKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00669729;
90% Identity: iTF_01491276;
80% Identity: -