Pmar020729.1
Basic Information
- Insect
- Paracoccus marginatus
- Gene Symbol
- -
- Assembly
- GCA_900065295.1
- Location
- FIZT01048832.1:9359-11125[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.82 65 4.5 0.2 5 21 80 96 76 97 0.88 2 16 0.34 27 5.7 1.4 2 20 101 119 100 121 0.93 3 16 0.0012 0.099 13.4 1.1 1 23 198 220 198 220 0.84 4 16 3.1e-07 2.4e-05 24.7 3.3 1 23 226 248 226 248 0.98 5 16 0.00029 0.023 15.4 4.2 1 23 253 275 253 275 0.97 6 16 0.012 0.96 10.3 2.2 1 23 281 303 281 303 0.97 7 16 1e-05 0.00083 19.9 0.9 2 23 310 331 309 331 0.96 8 16 0.0019 0.15 12.8 1.9 1 23 337 359 337 359 0.98 9 16 0.76 61 4.6 0.4 2 23 366 386 365 386 0.92 10 16 1.8e-06 0.00014 22.3 0.1 1 23 392 414 392 414 0.98 11 16 0.00025 0.02 15.6 2.9 5 23 423 441 422 441 0.96 12 16 1.8e-06 0.00014 22.3 0.4 2 23 448 469 447 469 0.97 13 16 1.1e-06 8.6e-05 23.0 0.1 1 23 475 497 475 497 0.98 14 16 2e-06 0.00016 22.2 0.3 1 23 503 525 503 525 0.97 15 16 2.2e-06 0.00017 22.0 1.8 1 23 531 553 531 553 0.98 16 16 0.00065 0.052 14.3 4.2 1 23 559 582 559 582 0.95
Sequence Information
- Coding Sequence
- ATGGAACTTCCGCTCAGAAATGAACGTGGGGAGGATTGCTGCAATGAGGacgaatttgataattttatcttGACATTcgatacaaatgaaaaaacggaATTAGTTAAAGGTGTTGATGCGGACGGAATTGAATCGATTGTACGTAATTACAATGAATGTTACCGAACAGAAAGAGAAGAATTGCACGACGAAGAAATGGATCTATCTGACACAGATTCGTCCTCCTTTCTGTGTATTttctgtaataaaaattttgaaaaggaatTGGAACTACAAGATCACATAAGCCGACAGGTTTCCGAGTGTAACCGTTGTAAGAAGTGGTTCTGTAACAAAGAATTGTACCGCGATCATGTCGAGTTGTGCGATAGAAAAAATCTTCCTGGTGAAGTTAGTTCGACTGATGTAAACTCGCTCGACGATTCTTCAACACCGTCGTTCAAAGATGAACAACGAATTTCGGATGTCGTTTTTTTCGACGCGAATACGTCCCACGTTACGGCGTATTCTAACAGTAGgccaaaaaacgccaaaattcctgttacgaagaaaaaagttaaatttCCACCGAACGAAGCTagtgttaaaatttttgaatgtcaCGATTGTGGGAAAACTTTTaaggctaaaaaaataatcgaagaaCACGTTAAAATACACACTAATGAAAAACCATTCACGTGCGCGGAATGTGGAAAGTCATTTCGACAGCGATCTCATTTCAAGACTCATCAAATCGTCCATTCGGCCGAGAATTATCAATGTTTTCATTGCCAGCGAATTTATCGCAATAAGAATCGCCTGAAAAGGCACATTTTGGCGCATCAGTACGGTAAAAAACACGAATGTCGATACTGCGGCAAGAAATACCTGCTGCGTACTTCGTTGGAGGGCCATATTCGTCGGCACACCGGCGAGGGTATCATCGTTTGCAAACTATGCGGCAAAGATTTCACAACCAAGTACAAAATGGAGAAACATTTGAAGGCGCATACttcggagaaaaaattcacctgcCAACtgtgcgagaaaaaattcctaaacgCGTACACTTTGAAACAGCACGTTTCCAGGCACAATGCggtgaagaataaaaaatgcgaTATTTGCGGCAACGACTATACCGAAGAATACTTTCCTACTCATTTGCGAACGCACACCGGCGAAAAGCCTTTCCAGTGTAACGTATGCGGTCGAcgtttcgctcagaattccgGTCTGTGGGAGCACCGAGCCGTGCACGAAGAATCCAAACGGTTTTACTGCGGCtgcggtaaattttttactcgaagcAAGGAATTGAAACGACACAAGAAACAGCATACCGGCGACGGATTCGTATACTGTAATTATTGCGGCAAAGGCTTCGCCTCCAAGTGGCTGCTACAGAATCACGAACGTAAACATACCGGCGAGCGACCTTTCGTGTGTCCCGTATGCAACGCCGGTTTCACGCAAAAGGCAAATTTATTTGCGCACTTGCGCTATCATACGGGCGAAAAGCCCTTCGCTTGCGAGAATTGCGGTCGACGTTTCGCCAGCAAGGCTAAACTAAAGTCTCATATCATGATACATACGGGCGAGAGACCGTTCGTGTGTACTTTCTGCGATAAAACATTCCGCCAGGTTAATTCGTTGCAGTATCACATCAGAATGCACACTCGAGAAAAACCATTCGAATGCGGTTGCTGTGATATGCGATTCAGCAGGAAATCATCTTTAAAACAGCATACTAATAGAATGCACGTTCAGGAGTGTTACGAGTGA
- Protein Sequence
- MELPLRNERGEDCCNEDEFDNFILTFDTNEKTELVKGVDADGIESIVRNYNECYRTEREELHDEEMDLSDTDSSSFLCIFCNKNFEKELELQDHISRQVSECNRCKKWFCNKELYRDHVELCDRKNLPGEVSSTDVNSLDDSSTPSFKDEQRISDVVFFDANTSHVTAYSNSRPKNAKIPVTKKKVKFPPNEASVKIFECHDCGKTFKAKKIIEEHVKIHTNEKPFTCAECGKSFRQRSHFKTHQIVHSAENYQCFHCQRIYRNKNRLKRHILAHQYGKKHECRYCGKKYLLRTSLEGHIRRHTGEGIIVCKLCGKDFTTKYKMEKHLKAHTSEKKFTCQLCEKKFLNAYTLKQHVSRHNAVKNKKCDICGNDYTEEYFPTHLRTHTGEKPFQCNVCGRRFAQNSGLWEHRAVHEESKRFYCGCGKFFTRSKELKRHKKQHTGDGFVYCNYCGKGFASKWLLQNHERKHTGERPFVCPVCNAGFTQKANLFAHLRYHTGEKPFACENCGRRFASKAKLKSHIMIHTGERPFVCTFCDKTFRQVNSLQYHIRMHTREKPFECGCCDMRFSRKSSLKQHTNRMHVQECYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -