Pmar018204.1
Basic Information
- Insect
- Paracoccus marginatus
- Gene Symbol
- -
- Assembly
- GCA_900065295.1
- Location
- FIZT01034785.1:14506-18862[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.16 13 6.7 3.8 1 23 264 287 264 287 0.96 2 22 0.017 1.4 9.8 0.9 1 23 297 320 297 320 0.96 3 22 0.0094 0.75 10.6 1.0 2 23 354 376 353 376 0.95 4 22 0.057 4.5 8.2 1.6 2 23 385 407 385 407 0.97 5 22 0.11 8.5 7.3 6.4 1 23 442 464 442 464 0.98 6 22 6e-07 4.7e-05 23.8 1.0 2 23 470 492 470 492 0.97 7 22 3.6e-05 0.0029 18.2 1.7 1 23 498 520 498 520 0.98 8 22 4.7e-05 0.0037 17.9 0.3 1 23 526 548 526 548 0.97 9 22 1.9e-05 0.0015 19.1 3.1 1 23 554 576 554 576 0.97 10 22 0.05 4 8.3 3.9 2 21 583 602 582 603 0.94 11 22 0.37 29 5.6 2.4 1 23 753 775 753 775 0.96 12 22 0.0016 0.13 13.0 2.9 1 23 794 817 794 817 0.98 13 22 0.0028 0.23 12.2 3.0 1 23 822 844 822 844 0.98 14 22 0.002 0.16 12.7 0.4 1 20 850 869 850 871 0.94 15 22 5.4e-05 0.0043 17.6 1.2 1 21 877 897 877 898 0.96 16 22 0.00017 0.013 16.1 0.3 1 20 937 956 937 957 0.97 17 22 0.00037 0.029 15.0 0.5 1 21 965 985 965 986 0.96 18 22 0.00054 0.043 14.5 1.4 3 23 1012 1032 1010 1032 0.97 19 22 6e-05 0.0048 17.5 0.1 1 22 1038 1059 1038 1059 0.96 20 22 1.4e-06 0.00011 22.7 5.2 1 23 1066 1088 1066 1089 0.96 21 22 3e-05 0.0024 18.5 0.6 1 23 1094 1116 1094 1116 0.99 22 22 0.021 1.7 9.5 1.9 1 20 1122 1141 1122 1143 0.93
Sequence Information
- Coding Sequence
- atggtCTCTGTGAATAGTATTTTGAGTGGAGTGCACGACGTAAAGAATGTTTCCCAACTATGCAGATTTTgcggaaaattgaaacaaccTGCGATTTCAATCTTCGACAAGTCGCATCTTATAAATTACCAAGAAATAATCAACTTTCATTTTAAGGGTATTCAAgtttcaaaaactgatgatttACCGCTGAAAGTGTGTAGCGATTGTATGAAAATAGTTCTTTCGTGGCATAGTTTCCATAATACATGTTTACGTGTGAACAACGCTTTATTATCTGTCGTCAATAAATTGAATGTTAAAGTAGTCGATTTGGAATCGGAGTGCGATTCAACAGAGAGTAAAAACGATGTCGAAGTAGTCGAAGTAGGTGTCGAATGTTTAACCCCCAACATCAGGAGAAGTGAAGATCAGAAAACTAATGAGAacgttattgaaaaattacgtgaaAGTAATATCcaGACGCTGATCGTCGACGAGATTCGTTCGGCCGAAGATGCagaatctaattttttatgcagtAAAGATATCGTATCGAAAACCTTACCCACGAAGATCACAACTCACGTTGTAGAGTACACAAATTTTCCACCTTCGCAAAATCTCTTATCAAACCAATGCACTTTGGGAGGAGCCGATGAATTTCTCGTCGACGTCGCTGAATTGAGTGACAGTTCGAAGAGTAAGCCTGAGACTGTGAATAAAGTACACGATGAGGTAGTACTATTTTCTCAAGTACAAGATTTTCCTTTGTTGAAAGGGTTCATATTGAATGATACAACGTCTCAACATCACTGCTCCACGTGTTTTAAAGCACACGCTACCAAAGAAGAACTTATCCAACATATTCGTGTCGAACATGAATCAAGTATTGGCCGAAGTGAGATGTATGAGTGTGACATGTGCGTTGAAGTATTTGTTCAAAATACTCATCGTAATTATCATCGATTGAGCGCACATAATATACGCACTCCGTTAGACGCAGAATTTAAAGTTGCTAGAACCAACTATCAGCAGACTAAAAGTACCATAGAACTGGACGGTAACGATAATTTGCTCAGTTGTGAATATTGTGAGATAAGTTTTGGTCTGAGAAGTAAACTTAAACTACACAAGATGCGTAAACATGgtgtaatttatcaaaacgtGAGACGATGTAATATTTGTTCGATGGTTTTGTTGAACAAGAGAGCTTTGAAACACCACATTAAAACCGTTCACTCTAAATTGCTAGACGAAGACGCCCGCACAAAAATTACCATCAGTGAAGAATATTTGCAGTTTTTATCGAAACGTATTGTATACGATGGTGAACTTCGTTACTTCCAATGCGAAGAGTGTCAATATAAGTGTCGTGGACTACATCAATTCATGCGTCATGGGAAACGCCACATCAATAGTAATCCCACTTGCGCTTATTGCGAAAAATCATTCTCTCAAAAAAGTTTACTCCGAAGGCATATTTCCACCGTTCATTTGGACGTTAGAAATTTCCAATGTACCGTTTGTGGAAGGCcattcggtgaaaaaaaacacatgcaACAACACATGAATTTGCACAAGGATGAATGTAGTTATATTTGCGAAGTATGTGGTAAGCAGTTTAAACAAGCACAATCTTTGGATTCGCATAAGCAGGTTCATAGAGGCGAGAAATCCTTCGCCTGCGAATATTGCGATAAAACATTCACCTTTAGAAATAGACTATTCAATCATATGAGGCAACACACCGGCAAGAACTTGAGCGTTTGTCAATTATGCGAGAAAAAGTTCACATGTAGTGCGCAACTGAAGAAGCATATgtgcGAAACCGGACGCTCCGTATTTGTCGACGTGAATGCAACGAGAAACGTTGAAAAGACCGTAACTGCTCGTGAAAaagcgccgccgccgccgttaTCAACCGATGAAGGACCCAGTGGTGCTACAAAATGCGTAAAATGCGGCTCGGTATTTCTGAAAAGCAAGATACGAAGTGAGAATAATCGCGGTACATGCTATGCatgttattcaaaaatgaataaaagtgCGACAGCGACGATGTCTGCAATTTTCCGAGACTACTTGGTAGTGGACGAGAACAAGCAGAGTTACTTCCTTTGTGACTTGTGTGATTTCTCTTGCGAGGCTTTTCCTGACGTATTTGCTCACCATTACAAAACCGAACACCCAAAGGCAAAtttatgccaaaattttcgcaacgAGAATGACGATCcattgagaaaattcgctATCGAGAAGAACGGAGTTACATCGTACCGTTGCGATCGTTGTCAAATGTCTTGTATTTCTCGTAATGTATTCATAAAACACTACGCAGAACATGGTGACCAAACGTTGCAGAGTAATACGGTAATGATTGAGTTTAATGATGATAAGTTTCGCTGCTCTGTTTGTAAAAAAACGTACGTGCACCTGCGCGCAGCTAAAAGACATTTAAAACGAGTccacagcgaaaaaaaataccagtgTAATGTATGCCAGAAGGCGTTCACGTACGAGCATAAAGCACGAGAACACGAAAAACGTCACCTTAAAATTAAACCCTTCATGTGCGATATTTGCGGAAACAGATTCGTCGATAAGTTATACTTGCAGAAACACAAAGATAAGAATTTATGCTCGAAGTACACGTGCGTCTCGTGTAATAAAAACTTCAGAAATAAAGCTTCTCTGCAACATCATATGTTGCTCTGCGAAGTTGATAGACAGAAAGAGAATTGCCCAGCCAATATCCCTTCTGCAGccaaaaatgaatcagttCCACAGAAACAAAACCAACTTTCCAAAGAAGCTCTATGGATGAAGTACGAATGCGCCaaatgtgagaaaaaattcaaatctaaaCGTATGCTTAGAATTCATATTGTTGAAGAATTCAACTTATCGCCTTACAAATGTTTCATATGCGATCAACGTTTCAGAACTACGGTAATGCTGAAAGAACATTTGAATTTATGTAACAAATCTATACTCGATGGAAACCACTGCGAAGACTTCTCCTTTACCAATAACGGTAATAATTCATTCGGTTGTAAGCTATGTGGTCgcacttttcgaaaaattggctacTTGCGACAACACTTCAGACTGCATTCCAGTTCAAAACCGTATGTATGTCCGTTGTGTGGTAAATCGTACGCTTTAAAAGCTTCTTTCCAGTCTCATATGTTGACTGAAACGAACCTTCGTAAATTCGTTTGTTCAAAGTGTGGAAAAAGATACAATTCCAGCTCCCATTTAACCGCTCACATTAAAAAGCATCATCGTTCGAGAGAATTCAAGTGTAACGCGTGTGATAAAGAGTTTGCCTACGAAGGAGATcttaaaaaacacgaaaaaactCACGAAGAAATCAAATCGTTCTTCTGCGACAAATgtggtggttttttcaaaactaaaagatGCCTGGAAGTGCACTGGGAACGGTGCagtcttttgaaaaagtga
- Protein Sequence
- MVSVNSILSGVHDVKNVSQLCRFCGKLKQPAISIFDKSHLINYQEIINFHFKGIQVSKTDDLPLKVCSDCMKIVLSWHSFHNTCLRVNNALLSVVNKLNVKVVDLESECDSTESKNDVEVVEVGVECLTPNIRRSEDQKTNENVIEKLRESNIQTLIVDEIRSAEDAESNFLCSKDIVSKTLPTKITTHVVEYTNFPPSQNLLSNQCTLGGADEFLVDVAELSDSSKSKPETVNKVHDEVVLFSQVQDFPLLKGFILNDTTSQHHCSTCFKAHATKEELIQHIRVEHESSIGRSEMYECDMCVEVFVQNTHRNYHRLSAHNIRTPLDAEFKVARTNYQQTKSTIELDGNDNLLSCEYCEISFGLRSKLKLHKMRKHGVIYQNVRRCNICSMVLLNKRALKHHIKTVHSKLLDEDARTKITISEEYLQFLSKRIVYDGELRYFQCEECQYKCRGLHQFMRHGKRHINSNPTCAYCEKSFSQKSLLRRHISTVHLDVRNFQCTVCGRPFGEKKHMQQHMNLHKDECSYICEVCGKQFKQAQSLDSHKQVHRGEKSFACEYCDKTFTFRNRLFNHMRQHTGKNLSVCQLCEKKFTCSAQLKKHMCETGRSVFVDVNATRNVEKTVTAREKAPPPPLSTDEGPSGATKCVKCGSVFLKSKIRSENNRGTCYACYSKMNKSATATMSAIFRDYLVVDENKQSYFLCDLCDFSCEAFPDVFAHHYKTEHPKANLCQNFRNENDDPLRKFAIEKNGVTSYRCDRCQMSCISRNVFIKHYAEHGDQTLQSNTVMIEFNDDKFRCSVCKKTYVHLRAAKRHLKRVHSEKKYQCNVCQKAFTYEHKAREHEKRHLKIKPFMCDICGNRFVDKLYLQKHKDKNLCSKYTCVSCNKNFRNKASLQHHMLLCEVDRQKENCPANIPSAAKNESVPQKQNQLSKEALWMKYECAKCEKKFKSKRMLRIHIVEEFNLSPYKCFICDQRFRTTVMLKEHLNLCNKSILDGNHCEDFSFTNNGNNSFGCKLCGRTFRKIGYLRQHFRLHSSSKPYVCPLCGKSYALKASFQSHMLTETNLRKFVCSKCGKRYNSSSHLTAHIKKHHRSREFKCNACDKEFAYEGDLKKHEKTHEEIKSFFCDKCGGFFKTKRCLEVHWERCSLLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -