Basic Information

Insect: Paracoccus marginatus
Gene Symbol: -
Assembly: GCA_900065295.1
Location: FIZT01030264.1:6749-9374[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 2e-07 0.00017 21.5 0.0 3 39 11 47 9 53 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	2e-07	0.00017	21.5	0.0	3	39	11	47	9	53	0.86

Sequence Information

Coding Sequence: ATGAAACgtgctaaaaaaatatacaccgTTGAAAATCTCATGAACGCTTTGCAAGATATAAAAGATGGAAAATACAGCATTACGGTAGCCGCAAGAGTCCATAATGTACCTCGCCAAACATTATCCGACAAAGTAAAAGGAAAAAGTCCAGCTATGCACTGTAAACCAGGACCTCATCCAATCCTCGGtgtcgaaattgaagaaaacttGAGAGACTGGGCGATACAGAATATGGATCAGGGATTTGTAACGACCAAAGACTCTATATTATTTTCTGTTCGACGACTTATCGAAATCAACTTCAACTCGAGCGTAAACCATTACTTCAAGAACCGAAACTTGGGTACCGGATGGTAcaaagctttcaaaaaaagatatCCGGAAGTGGCTTACAagaaaatagataattttaaatatccCCAAATATCGAAACCCGAGTTGCAAGCGTGGTTCCGTAAAGTGAGAAAAAGTCTCGGCAAGAACGGCGAAATCTTACTCGATCCCGAGCGCATATTTTGCATGGGTCAGCTTCCACTAACTTTAAATTCGGCgtcgaaaaataacgattcGCGAAGTGTCGAAAAAGAAACCGCACTTTTACTGTTGATCGCCAACGTCGAAGCTAAACTCGCCCCAGTCATGATCAACTTTAAACATTTTCCGTCTTCTGAGTCGAATTCCAAACATTCTATTACACAGTCTACGTACACATGTGTTTCGACCGGTAGATCGCAATGccaaatattttataattacatCGTCAACGTTTTTCATCCTCATTTAGTCAATAACGGCGTCGAATTACCTGTTGTTCTTTTCGTCGATCCGCGAATAGCTCACGTTAGCTTTCCTCTTCAAGAATTCTGTCAAGAGAAAGGCATCCATATGATACCCTTTTTGCCAAACGCCAGTAACTTTCATCCTTTTGAAAacggattttttcaactgttttccGATACGTGGAAAACCGAAGTCAAGTTTTGGCCAGCTCGTAATAataatcaaaatattaaaGAAGAAAACGTCGAAACGGTTATCGcaaatattattcaatttaccGAATTTAATAATACGGTTAAACGAGCTTTTCGTTCATGCGGATTATTTCCATTCGATGTAAACGCCGTAGACTGTGATTCAGTTGATCGTAGAAAACCGCAACCGGTCTATTTACGTAGCTACCATTATCAATCTAAACCTGAATCTAATTCGAGGGTTGAATCAACTCCTAAGTCGAAGATCAACCACGGTTCAGTTAAAAATGAAAGGCCAGAATCAGTCGACGATTTCTCATCGAATTGCCATTTATcgattaatgaaaatatagTGGAAAAATATATCATCGAAGACTTTATTGACGATTTTATCGAAGAAGAAGACTGTGCAGCCGTTGATAACGATGAAAACCACCACGAACAACCATTCCAATGTACCGAAAACGAATTAATTATACCAGAACCGGTAAATTCGCTGAAAAGAAAAGATGAATCACAGCAACATACCAGCCCTAAAAGAACGAAAATATCTGATCTGGCGAATATGGCTGAAAAAAGTGAACCTGATTTAAACATTAATGTTGAAAACATCATCGCAACTCCAGACGACACTCCAGatgtattgagaaaaaaaaataaagacttGCAAGGATTACTCGAAAAGGTTATTGATCTGTTGAAAGAGAAAAGCAACGTGTGTTTGAATTTggagaaacagaattcagctTTAAATTTACAAATTCTGTCTTTAAAAGATATCGTTTCgataacgaaaaatttactcagtATTCGTAATGTGGAAGTCGAAAACATGCAAAAAGATATGTCTTCTTTGCAAGATAAAATAAACGCCGAAAAAGAACGTCACAATAAAATGATCGAAACCGTCAGCAGTGCTAATAAACTGAACGATGACATTAAAGGAGAATATCAAAACCAGATGAGCTTATTTCAACAACTTCGAGACAAATACAACGAAAAGGTATCCCTTTTGACTCAAGAAAATCAAAGATTGAAAACCGAAGTTCAAAATCTGAAGAACGAACAAGAAAACGTCAAAGCTGAAACTATCTAA
Protein Sequence: MKRAKKIYTVENLMNALQDIKDGKYSITVAARVHNVPRQTLSDKVKGKSPAMHCKPGPHPILGVEIEENLRDWAIQNMDQGFVTTKDSILFSVRRLIEINFNSSVNHYFKNRNLGTGWYKAFKKRYPEVAYKKIDNFKYPQISKPELQAWFRKVRKSLGKNGEILLDPERIFCMGQLPLTLNSASKNNDSRSVEKETALLLLIANVEAKLAPVMINFKHFPSSESNSKHSITQSTYTCVSTGRSQCQIFYNYIVNVFHPHLVNNGVELPVVLFVDPRIAHVSFPLQEFCQEKGIHMIPFLPNASNFHPFENGFFQLFSDTWKTEVKFWPARNNNQNIKEENVETVIANIIQFTEFNNTVKRAFRSCGLFPFDVNAVDCDSVDRRKPQPVYLRSYHYQSKPESNSRVESTPKSKINHGSVKNERPESVDDFSSNCHLSINENIVEKYIIEDFIDDFIEEEDCAAVDNDENHHEQPFQCTENELIIPEPVNSLKRKDESQQHTSPKRTKISDLANMAEKSEPDLNINVENIIATPDDTPDVLRKKNKDLQGLLEKVIDLLKEKSNVCLNLEKQNSALNLQILSLKDIVSITKNLLSIRNVEVENMQKDMSSLQDKINAEKERHNKMIETVSSANKLNDDIKGEYQNQMSLFQQLRDKYNEKVSLLTQENQRLKTEVQNLKNEQENVKAETI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -