Pmar006554.1
Basic Information
- Insect
- Paracoccus marginatus
- Gene Symbol
- -
- Assembly
- GCA_900065295.1
- Location
- FIZT01006483.1:3352-4200[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.5e-08 3.7e-05 23.6 0.0 7 40 67 100 64 103 0.88 2 2 2 1.6e+03 -0.9 0.1 5 13 140 148 139 149 0.85
Sequence Information
- Coding Sequence
- ATGACCGGTGTTACGAGTAGTGCTACGAGAATTCAACCTAGACGAAATTCGGCAAAGTATCGAAACGATCCAGATTATGTGTACGatgatttcgttgaaaaagatGACGATTACGAACCCGCCACCAAGGCAGGTTCGAAACGAAAATGTTCGCAACCTGAGCCAGAGTCGGGTCCACCGCGCCATATCCGAATTTTGGACGCCATCACCGAAATCAACTCTACCCAAATATCACTGAATGCGGCTTCGAAGACTTTTGGTATACCTAAGTCGACTTTACACGATCACCTGagtgaaaaatctaaaaaattcacgcgAGGCAGACACAAAGATTTCTCCCCTAGTTCCGAAGAATTAATATACTACGATCTTATGTGGTTTCTATTGCGCAGAAGAAAAGCGTGTTcggctttgaaaattgaagccgCTATCCAAGCGGTTTCTGATATTATTGTGGATCTAAATATCCCgttacctgaaaaatttgcggGTAAAAGCAAATTTGTCGTCGGTAGAAAATGGTTTAAATCGTTCTGCTCGAGATACCAAGTAGAAGCGAATAAAAAAGTGATCGTATGTGATGACTTTGAGAAATATCCGGTGAAAAAACGGTACttgtattttgcaaaaaattctcccAAGTTCATGGAATGGCCCATCAAAAGTGAAGATTCCGGGGTATCCGAAAGCTGCAGTGGTAACGGCAGTTCGAATGAAAGCAGTATTACCGACGAAGCTTGCAGTTCcgatgaattttcgaattcaacgaTTGGTCAAAGTCCGAACGAAGATCCGAACTCCACTCAGACCGAAGATGGGCCAAAATCTGAACCAGACTGTAGTCAGTGA
- Protein Sequence
- MTGVTSSATRIQPRRNSAKYRNDPDYVYDDFVEKDDDYEPATKAGSKRKCSQPEPESGPPRHIRILDAITEINSTQISLNAASKTFGIPKSTLHDHLSEKSKKFTRGRHKDFSPSSEELIYYDLMWFLLRRRKACSALKIEAAIQAVSDIIVDLNIPLPEKFAGKSKFVVGRKWFKSFCSRYQVEANKKVIVCDDFEKYPVKKRYLYFAKNSPKFMEWPIKSEDSGVSESCSGNGSSNESSITDEACSSDEFSNSTIGQSPNEDPNSTQTEDGPKSEPDCSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -