Pmar004696.1
Basic Information
- Insect
- Paracoccus marginatus
- Gene Symbol
- -
- Assembly
- GCA_900065295.1
- Location
- FIZT01002637.1:3260-3922[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-10 8.9e-08 31.9 0.0 1 37 15 51 15 55 0.94 2 2 2.5 2e+03 -1.2 0.1 3 12 75 84 74 87 0.83
Sequence Information
- Coding Sequence
- ATGCCACCACGTAAACCTGCCAAGCAACCACGAAAGCTTTGGGACGaggaaatcatgaaaaaagcTTTAAAAGCGGTAGTCGAAAACAAAATGGGTTACCTAACAGCGTCCCGAGTCTACAACGTGCCTCGTACTTCGCTTCATCGTTTCGTAACGCAAATCAAACGAGGCGAAGAAATCACTCTGCAACACAGCAAACTCGGACGCCGACCAGTGCTAACCGAGAAACTCGAAGAAGCTTTGGCCGAATGCGCTTTGGAACTACAAAGGAACAATTTCACTCTGACCGGAGTCGATTTGCGAGAGATGGCTTATCAAATTGCTCTGAAGCACGGCATAAGGACTCCGTTTATGAAAGATAAAATCGCAGGTAGGCATTGGCTAAGGGATTTTCTCAGACGAAATCCGAGGGTGTTATGCGACGAGGCGATGCATAAAGATGAACGCGAGCTTCtcaaattgactgaaaatttaacgTGCGAGATGCTTATCGACGAATTTGGCGTCGCACCTGtggccgacgacgacgatgatgatttCGATGATCGTGGTGGAAATGACGATGAAGATTATTACGATGATGATTAg
- Protein Sequence
- MPPRKPAKQPRKLWDEEIMKKALKAVVENKMGYLTASRVYNVPRTSLHRFVTQIKRGEEITLQHSKLGRRPVLTEKLEEALAECALELQRNNFTLTGVDLREMAYQIALKHGIRTPFMKDKIAGRHWLRDFLRRNPRVLCDEAMHKDERELLKLTENLTCEMLIDEFGVAPVADDDDDDFDDRGGNDDEDYYDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -